Browse Element(s) Details


Os.7996.1.S1_at

Description gb:AK070691.1
DB_XREF= gi:32980715
TID=Os.7996.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.7996 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003B17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023058J05, full insert sequence.
FL= gb:AK070691.1 gb:AK100087.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0245011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02410Os.1311.1.S1_at11/112+838738..842672Luminal binding protein 3 precursor, putative, expressed
LOC_Os02g02424OsAffx.24067.1.S1_at11/112+853767..859877Zinc finger, C2H2 type family protein, expressed
LOC_Os02g02424Os.18086.1.A1_at11/112+853767..859877Zinc finger, C2H2 type family protein, expressed
LOC_Os02g02440OsAffx.24068.1.S1_at11/112+861602..862157hypothetical protein
LOC_Os02g02450Os.7996.1.S1_at11/112+862273..864882transposon protein, putative, unclassified, expressed
LOC_Os02g02460Os.53376.1.S1_at11/112+866007..869292transposon protein, putative, unclassified, expressed
LOC_Os02g02470Os.2246.1.S1_at11/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02470OsAffx.1157.1.S1_at2/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02480Os.17893.1.S1_at11/112+875904..878615Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g02490Os.56364.1.S1_x_at11/112+884324..887679Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7996.1.S1_at--624--2151Chr02:864330..864354 (25 bp)
ACAGCATGCTCCTCTTCAAGGTCTT
LOC_Os02g02450
Os.7996.1.S1_at--1064--2911Chr02:864404..864428 (25 bp)
AAGGAGTGGCGCATCCGGCGCTACA
LOC_Os02g02450
Os.7996.1.S1_at--1050--4011Chr02:864592..864616 (25 bp)
CGTCGGCTCGATCTTGCTGTCCATG
LOC_Os02g02450
Os.7996.1.S1_at--150--631Chr02:864614..864638 (25 bp)
ATGCTGACACTCATGGGTGCCAGGG
LOC_Os02g02450
Os.7996.1.S1_at--1066--3551Chr02:864649..864673 (25 bp)
CATCAAGTTCTTGTCTCGAGGTGAC
LOC_Os02g02450
Os.7996.1.S1_at--814--751Chr02:864675..864699 (25 bp)
ATGTCAAGTTGGACGCCTTCTTGGC
LOC_Os02g02450
Os.7996.1.S1_at--401--10551Chr02:864692..864716 (25 bp)
TTCTTGGCAACACTCCATGACATGA
LOC_Os02g02450
Os.7996.1.S1_at--645--4331Chr02:864706..864730 (25 bp)
CCATGACATGAGATAGCTACTAGCT
LOC_Os02g02450
Os.7996.1.S1_at--902--1411Chr02:864727..864751 (25 bp)
AGCTAGCTATCCATGTAGGGAAACT
LOC_Os02g02450
Os.7996.1.S1_at--39--7031Chr02:864781..864805 (25 bp)
GTACATATGTATCCACGTCATAGGG
LOC_Os02g02450
Os.7996.1.S1_at--49--991Chr02:864815..864839 (25 bp)
AGGAGTCGTGGCAAACTGTATAATC
LOC_Os02g02450
Target Sequence 
ACAGCATGCTCCTCTTCAAGGTCTTCTTCGTGCTCGCCCTGGCGCTCAGCGTGTTCCGGGAGGTGGCGAGCCGGAAGGAG
TGGCGCATCCGGCGCTACATCCCGAGCACCATCGGCATGGCCATCACCTTCTTCATGCCGCCGCGCGTGCCCGTCGGCAT
GTGCATCGGCAGCCTGGTGGCGTACCTGTGGGAGAAGATGGACGCCGGCCGCGGGCGGATGCTCTCGCCGGCGCTGGCGT
CGGGGCTCATCTGCGGCGACGGCGTCGGCTCGATCTTGCTGTCCATGCTGACACTCATGGGTGCCAGGGCGCCCATCTGC
ATCAAGTTCTTGTCTCGAGGTGACAATGTCAAGTTGGACGCCTTCTTGGCAACACTCCATGACATGAGATAGCTACTAGC
TAGCTATCCATGTAGGGAAACTAGATCATTTTCTCAGGTGTCAAAACTTTTGTACATATGTATCCACGTCATAGGGGCTT
GAGTTAGGAGTCGTGGCAAACTGTATAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis