Browse Element(s) Details


Os.18086.1.A1_at

Description gb:AK100473.1
DB_XREF= gi:32985682
TID=Os.18086.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18086 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023093M20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023093M20, full insert sequence.
FL= gb:AK100473.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0242411/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02410Os.1311.1.S1_at11/112+838738..842672Luminal binding protein 3 precursor, putative, expressed
LOC_Os02g02424OsAffx.24067.1.S1_at11/112+853767..859877Zinc finger, C2H2 type family protein, expressed
LOC_Os02g02424Os.18086.1.A1_at11/112+853767..859877Zinc finger, C2H2 type family protein, expressed
LOC_Os02g02440OsAffx.24068.1.S1_at11/112+861602..862157hypothetical protein
LOC_Os02g02450Os.7996.1.S1_at11/112+862273..864882transposon protein, putative, unclassified, expressed
LOC_Os02g02460Os.53376.1.S1_at11/112+866007..869292transposon protein, putative, unclassified, expressed
LOC_Os02g02470Os.2246.1.S1_at11/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02470OsAffx.1157.1.S1_at2/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02480Os.17893.1.S1_at11/112+875904..878615Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g02490Os.56364.1.S1_x_at11/112+884324..887679Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18086.1.A1_at--239--1051Chr02:854439..854463 (25 bp)
AGGTGTTTCCATACAAGCATGTCAG
LOC_Os02g02424
Os.18086.1.A1_at--268--5591Chr02:854402..854426 (25 bp)
GAAATCCAGCGCTCATGTATACACT
LOC_Os02g02424
Os.18086.1.A1_at--47--10191Chr02:854289..854409 (25 bp)
TATACACTCAGGCAAACTTCACGGA
LOC_Os02g02424
Os.18086.1.A1_at--99--5631Chr02:854210..854234 (25 bp)
GACTGTCGAAACTCTTACGCGCAAG
LOC_Os02g02424
Os.18086.1.A1_at--1039--4071Chr02:854168..854192 (25 bp)
CGACGCTTCGTCGTTGGACAATGGA
LOC_Os02g02424
Os.18086.1.A1_at--340--2971Chr02:854149..854173 (25 bp)
AATGGAACTGAGTACCTGCGCTGGT
LOC_Os02g02424
Os.18086.1.A1_at--138--4071Chr02:854100..854124 (25 bp)
CGAGCCAAACTCATTAGCCGTATCA
LOC_Os02g02424
Os.18086.1.A1_at--81--10471Chr02:854087..854111 (25 bp)
TTAGCCGTATCATCTTTGCATCTGA
LOC_Os02g02424
Os.18086.1.A1_at--184--7091Chr02:854046..854070 (25 bp)
GTCAATGGCTCAATGCTTTGTCGTA
LOC_Os02g02424
Os.18086.1.A1_at--547--9991Chr02:854010..854034 (25 bp)
TAGCCCACTCACGTTGGTAGTTAGA
LOC_Os02g02424
Os.18086.1.A1_at--660--6571Chr02:853856..853880 (25 bp)
GATTCTTTACTGTTTTGACCACTGT
LOC_Os02g02424
Target Sequence 
AGGTGTTTCCATACAAGCATGTCAGGGACAACCATGAGAAATCCAGCGCTCATGTATACACTCAGGCAAACTTCACGGAG
ATGGACGAGCAGTTACTCTCGTGTCCGAGAGGTGGACGGAAGAGGAAAGCTGTGACTGTCGAAACTCTTACGCGCAAGAG
GGTGACCATGCACGGCGACGCTTCGTCGTTGGACAATGGAACTGAGTACCTGCGCTGGTTGCTTTCTGGTGGGGATGATG
ATTCGAGCCAAACTCATTAGCCGTATCATCTTTGCATCTGATTGTGATGGTCATGGTGTCAATGGCTCAATGCTTTGTCG
TAAAGGGGTGTGCTAGCCCACTCACGTTGGTAGTTAGATGGCCGTGGTGTTTTTGTTGTAAGTAGTTGGTCTGAATTTAG
AAAGTGCAGCAGTTTTAGAGGAAGCCTACTAGTAGTATATATTTGTAGCATAATGGCGCAGTTTGAGTTGTGAGTTGTAA
GTATTTTGATTCTTTACTGTTTTGACCACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18086.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis