Browse Element(s) Details


OsAffx.1157.1.S1_at

Description gb:NM_189443.1
DB_XREF= gi:34905969
GEN=OJ1656_A11.26
TID=OsAffx.1157.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1656_A11.26 (OJ1656_A11.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g024702/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02424OsAffx.24067.1.S1_at11/112+853767..859877Zinc finger, C2H2 type family protein, expressed
LOC_Os02g02424Os.18086.1.A1_at11/112+853767..859877Zinc finger, C2H2 type family protein, expressed
LOC_Os02g02440OsAffx.24068.1.S1_at11/112+861602..862157hypothetical protein
LOC_Os02g02450Os.7996.1.S1_at11/112+862273..864882transposon protein, putative, unclassified, expressed
LOC_Os02g02460Os.53376.1.S1_at11/112+866007..869292transposon protein, putative, unclassified, expressed
LOC_Os02g02470Os.2246.1.S1_at11/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02470OsAffx.1157.1.S1_at2/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02480Os.17893.1.S1_at11/112+875904..878615Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g02490Os.56364.1.S1_x_at11/112+884324..887679Leucine Rich Repeat family protein, expressed
LOC_Os02g02500Os.49670.1.S1_at11/112+890263..894233Remorin, C-terminal region family protein, expressed
LOC_Os02g02510Os.8844.1.S1_at11/112+894656..895626RNA polymerase Rpb4 family protein, expressed
LOC_Os02g02520Os.19594.1.A1_at11/112+896074..900372expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0010073biological_processmeristem maintenance
GO:0009706cellular_componentchloroplast inner membrane
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1157.1.S1_at--318--7211Chr01:43111635..43111659 (25 bp)
GTCGTCGTCTTTGGCCACAGATCTC
NONE
OsAffx.1157.1.S1_at--669--7151Chr01:43111641..43111665 (25 bp)
GTCTTTGGCCACAGATCTCGCGCCA
NONE
OsAffx.1157.1.S1_at--1062--82316Chr08:7889262..7889672 (25 bp)
GGCAGCTATACCTGGCCAAATGGGC
NONE
OsAffx.1157.1.S1_at--172--43726Chr10:19536767..19536791 (25 bp)
CCAAATGGGCCGTGCCAAGCCGGGC
NONE
OsAffx.1157.1.S1_at--426--3912Chr01:43111729..43111753 (25 bp)
CGGCCCGAGCACAGCAGTACTGTAG
NONE
OsAffx.1157.1.S1_at--149--2131Chr01:43111739..43111763 (25 bp)
ACAGCAGTACTGTAGCCGGCCAAGG
NONE
OsAffx.1157.1.S1_at--329--8653Chr07:302136..302160 (25 bp)
TGGGCCGTGCCAGCATGGCCCGTTA
NONE
OsAffx.1157.1.S1_at--523--873Chr07:302150..302174 (25 bp)
ATGGCCCGTTATCCCGTGCCGTGTT
NONE
OsAffx.1157.1.S1_at--929--103321Chr11:26283705..26283729 (25 bp)
TTATCCCGTGCCGTGTTTGGGCCGA
NONE
OsAffx.1157.1.S1_at--548--9672Chr03:12587767..12588228 (25 bp)
TCAGCCCTGTGCCATGCCGTGCTGG
NONE
OsAffx.1157.1.S1_at--1142--17921Chr12:22693949..22693969 (21 bp)
ACCGCCCGTTTGGCCTGCTATAGGG
NONE
Target Sequence 
GTCGTCGTCTTTGGCCACAGATCTCGCGCCACCGGTGGGAGTGTATGAGCGTGGGGCAGCTATACCTGGCCAAATGGGCC
GTGCCAAGCCGGGCCGGCCCGAGCACAGCAGTACTGTAGCCGGCCAAGGCCCGGCACGGCACGCCAGCCTGTGGGCCGTG
CCAGCATGGCCCGTTATCCCGTGCCGTGTTTGGGCCGACGCCTCAGCCCTGTGCCATGCCGTGCTGGGCCGGACCGCCCG
TTTGGCCTGCTATAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis