Browse Element(s) Details


Os.53376.1.S1_at

Description gb:AK072347.1
DB_XREF= gi:32982370
TID=Os.53376.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53376 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023054D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054D10, full insert sequence.
FL= gb:AK072347.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0246011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02410Os.1311.1.S1_at11/112+838738..842672Luminal binding protein 3 precursor, putative, expressed
LOC_Os02g02424OsAffx.24067.1.S1_at11/112+853767..859877Zinc finger, C2H2 type family protein, expressed
LOC_Os02g02424Os.18086.1.A1_at11/112+853767..859877Zinc finger, C2H2 type family protein, expressed
LOC_Os02g02440OsAffx.24068.1.S1_at11/112+861602..862157hypothetical protein
LOC_Os02g02450Os.7996.1.S1_at11/112+862273..864882transposon protein, putative, unclassified, expressed
LOC_Os02g02460Os.53376.1.S1_at11/112+866007..869292transposon protein, putative, unclassified, expressed
LOC_Os02g02470Os.2246.1.S1_at11/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02470OsAffx.1157.1.S1_at2/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02480Os.17893.1.S1_at11/112+875904..878615Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g02490Os.56364.1.S1_x_at11/112+884324..887679Leucine Rich Repeat family protein, expressed
LOC_Os02g02500Os.49670.1.S1_at11/112+890263..894233Remorin, C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53376.1.S1_at--943--2591Chr02:866359..866383 (25 bp)
AACGACAAGGTCCAGCTCTTCCTCA
LOC_Os02g02460
Os.53376.1.S1_at--1055--2691Chr02:866295..866319 (25 bp)
AAGCTCAAGCTAGCCTTCCATCGAT
LOC_Os02g02460
Os.53376.1.S1_at--1094--9711Chr02:866291..866315 (25 bp)
TCAAGCTAGCCTTCCATCGATCTTG
LOC_Os02g02460
Os.53376.1.S1_at--697--511Chr02:866276..866300 (25 bp)
ATCGATCTTGCCACGCGTACGTGTA
LOC_Os02g02460
Os.53376.1.S1_at--414--8751Chr02:866149..866173 (25 bp)
TGTAGCATACATATGTACTCTCTCT
LOC_Os02g02460
Os.53376.1.S1_at--142--9511Chr02:866123..866147 (25 bp)
TCTCTCTTTACTGATTGGTTCTTAA
LOC_Os02g02460
Os.53376.1.S1_at--37--9611Chr02:866096..866120 (25 bp)
TCATTTGTTATACTTCACATGTACA
LOC_Os02g02460
Os.53376.1.S1_at--565--3311Chr02:866081..866105 (25 bp)
CACATGTACAAATTAAGGCCTTGGA
LOC_Os02g02460
Os.53376.1.S1_at--683--2951Chr02:866067..866091 (25 bp)
AAGGCCTTGGATGGATATATGTCCA
LOC_Os02g02460
Os.53376.1.S1_at--1128--6591Chr02:866035..866059 (25 bp)
GATTGATAGCATGCGTGCTTTGCAT
LOC_Os02g02460
Os.53376.1.S1_at--46--4671Chr02:866023..866047 (25 bp)
GCGTGCTTTGCATATTCATGATCAA
LOC_Os02g02460
Target Sequence 
AACGACAAGGTCCAGCTCTTCCTCAGGACGCTGCCCACGCCGCCATGATCCATCCATCCACTTCAAGCTCAAGCTAGCCT
TCCATCGATCTTGCCACGCGTACGTGTAGGTNGATTAATTAGTTCTTTAGTGANTNTACTTAATNNATTAATNTGNCGAT
TGNNNTATATATATTANCCTTGTAATNGTNAGNTGTNGAAGAGAAGCNNCTGGNTGTAGCATACATATGTACTCTCTCTC
TCTCTCTTTACTGATTGGTTCTTAAATTCATTTGTTATACTTCACATGTACAAATTAAGGCCTTGGATGGATATATGTCC
ATGTAAAAGATTGATAGCATGCGTGCTTTGCATATTCATGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis