Browse Element(s) Details


Os.2246.1.S1_at

Description gb:CB685686
DB_XREF= gi:29689411
DB_XREF=OSJNEf16F05.r
CLONE=OSJNEf16F05
TID=Os.2246.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.2246 (NCBI UniGene Cluster)
UG_TITLE=Protochlorophyllide reductase homolog mRNA, partial cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0247011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02424OsAffx.24067.1.S1_at11/112+853767..859877Zinc finger, C2H2 type family protein, expressed
LOC_Os02g02424Os.18086.1.A1_at11/112+853767..859877Zinc finger, C2H2 type family protein, expressed
LOC_Os02g02440OsAffx.24068.1.S1_at11/112+861602..862157hypothetical protein
LOC_Os02g02450Os.7996.1.S1_at11/112+862273..864882transposon protein, putative, unclassified, expressed
LOC_Os02g02460Os.53376.1.S1_at11/112+866007..869292transposon protein, putative, unclassified, expressed
LOC_Os02g02470Os.2246.1.S1_at11/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02470OsAffx.1157.1.S1_at2/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02480Os.17893.1.S1_at11/112+875904..878615Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g02490Os.56364.1.S1_x_at11/112+884324..887679Leucine Rich Repeat family protein, expressed
LOC_Os02g02500Os.49670.1.S1_at11/112+890263..894233Remorin, C-terminal region family protein, expressed
LOC_Os02g02510Os.8844.1.S1_at11/112+894656..895626RNA polymerase Rpb4 family protein, expressed
LOC_Os02g02520Os.19594.1.A1_at11/112+896074..900372expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0010073biological_processmeristem maintenance
GO:0009706cellular_componentchloroplast inner membrane
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2246.1.S1_at--312--9291Chr02:875091..875115 (25 bp)
TCCGTACTTCATATTCGATGCTCAA
LOC_Os02g02470
Os.2246.1.S1_at--72--10231Chr02:875102..875219 (25 bp)
TATTCGATGCTCAAGAAGGTTCAAG
LOC_Os02g02470
Os.2246.1.S1_at--208--2851Chr02:875220..875244 (25 bp)
AAGTACACTGTTCGCAGCTTCTGAT
LOC_Os02g02470
Os.2246.1.S1_at--141--6371Chr02:875242..875266 (25 bp)
GATCCCCAAGTTCCAGATTACTGCG
LOC_Os02g02470
Os.2246.1.S1_at--655--1251Chr02:875256..875280 (25 bp)
AGATTACTGCGAGATGCTCAAGTCT
LOC_Os02g02470
Os.2246.1.S1_at--855--4831Chr02:875271..875295 (25 bp)
GCTCAAGTCTGAAGACTGGCCTGTT
LOC_Os02g02470
Os.2246.1.S1_at--957--2751Chr02:875282..875306 (25 bp)
AAGACTGGCCTGTTTGTGCTTGCAT
LOC_Os02g02470
Os.2246.1.S1_at--544--7331Chr02:875297..875321 (25 bp)
GTGCTTGCATCTCATATGACTGTAA
LOC_Os02g02470
Os.2246.1.S1_at--303--3731Chr02:875660..875684 (25 bp)
CGTTACAATTTATCTTTGCCCCTTG
LOC_Os02g02470
Os.2246.1.S1_at--351--104129Chr09:2246496..2246544 (25 bp)
TTATCTTTGCCCCTTGTTAAATGGC
NONE
Os.2246.1.S1_at--787--6611Chr02:875715..875739 (25 bp)
GTTGTAAAAGCATAGTCCCTTCATT
LOC_Os02g02470
Target Sequence 
TCCGTACTTCATATTCGATGCTCAAGAAGGTTCAAGAAGTACACTGTTCGCAGCTTCTGATCCCCAAGTTCCAGATTACT
GCGAGATGCTCAAGTCTGAAGACTGGCCTGTTTGTGCTTGCATCTCATATGACTGTAATCCAATGAATGCATCTGAAGAA
TCACATAACCTCGAGACGTCGCAGCTAGTATGGGAGAAGACATTAGAGATGATTGGCCTCCCACCAGATGCCGTGGACAA
GTTCATCGAAGGGGAATCGGTTCAGTGNCGTTATGGACAACAGAAGGCAGAATAGGCTATTTCGTAGACAGCAAATATGT
GATAATTTCGAATGTTCGATCCATTNNANNNNGNNNNNNGTTNGCCAGTGGTTTTGTTCCAGTACTTTGTAATAGTACAT
CTGTCATACCCTTTTTTNNGTTTCATATGGTTGGTAAANNNAANNNNNNNAAATAGAAGTATGACAAAACAAAGTTCGTT
ACAATTTATCTTTGCCCCTTGTTAAATGGCAAAACGTTTGNAGAGTTTTGAGTTGTAAAAGCATAGTCCCTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2246.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis