Browse Element(s) Details


Os.28063.1.S1_at

Description gb:AK061815.1
DB_XREF= gi:32971833
TID=Os.28063.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.28063 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033080J11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B05, full insert sequence.
FL= gb:AK102022.1 gb:AK061815.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0253011/11signal peptide peptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02490Os.56364.1.S1_x_at11/112+884324..887679Leucine Rich Repeat family protein, expressed
LOC_Os02g02500Os.49670.1.S1_at11/112+890263..894233Remorin, C-terminal region family protein, expressed
LOC_Os02g02510Os.8844.1.S1_at11/112+894656..895626RNA polymerase Rpb4 family protein, expressed
LOC_Os02g02520Os.19594.1.A1_at11/112+896074..900372expressed protein
LOC_Os02g02530Os.28063.1.S1_at11/112+906668..911506signal peptide peptidase family protein, expressed
LOC_Os02g02530Os.7138.1.A1_x_at2/112+906668..911506signal peptide peptidase family protein, expressed
LOC_Os02g02540Os.21831.1.S1_at11/112+918797..923968Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os02g02550Os.2370.2.S1_at10/112+924473..926622peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g02560Os.2370.1.S1_at11/112+926031..929928UTP-glucose-1-phosphate uridylyltransferase, putative, expressed
LOC_Os02g02570Os.51729.1.S1_at11/112+930260..934270autophagy protein Apg5 family, putative, expressed
LOC_Os02g02580Os.52758.1.S1_at11/112+934591..937786expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28063.1.S1_at--361--1191Chr02:911053..911077 (25 bp)
AGTAGCACTCTAACAGCAGGGCAAG
LOC_Os02g02530
Os.28063.1.S1_at--451--191Chr02:911089..911113 (25 bp)
ATTTCATGTAAGGTCGTCGGCAGCT
LOC_Os02g02530
Os.28063.1.S1_at--991--10091Chr02:911117..911141 (25 bp)
TAGGCTGGATGACCTCTCGGATACC
LOC_Os02g02530
Os.28063.1.S1_at--673--7951Chr02:911135..911159 (25 bp)
GGATACCAGCTCACTTAAGAACTTA
LOC_Os02g02530
Os.28063.1.S1_at--1021--6071Chr02:911230..911254 (25 bp)
GAGTAGATTCTTAAGAGGCCTGCCA
LOC_Os02g02530
Os.28063.1.S1_at--1114--6211Chr02:911244..911268 (25 bp)
GAGGCCTGCCAATATGGTCCAGTGG
LOC_Os02g02530
Os.28063.1.S1_at--540--9211Chr02:911261..911285 (25 bp)
TCCAGTGGCTTGACTTTACCCGGTA
LOC_Os02g02530
Os.28063.1.S1_at--1118--9951Chr02:911284..911308 (25 bp)
TACCCCTTTTGCTTTAGTACTGACT
LOC_Os02g02530
Os.28063.1.S1_at--605--251Chr02:911367..911391 (25 bp)
ATATCTTTCTTGGTACCTTCTCTTG
LOC_Os02g02530
Os.28063.1.S1_at--509--531Chr02:911418..911442 (25 bp)
ATCCCATCTTCCGTTTGGAACTATG
LOC_Os02g02530
Os.28063.1.S1_at--630--6191Chr02:911457..911481 (25 bp)
GAGGAATTGCACTCTTTCTCGCAAA
LOC_Os02g02530
Target Sequence 
AGTAGCACTCTAACAGCAGGGCAAGAAAAGGCAGAAATTTCATGTAAGGTCGTCGGCAGCTAAGTAGGCTGGATGACCTC
TCGGATACCAGCTCACTTAAGAACTTAGAAATGATTCGCATGATAGAAACCCTTTTTTGATTTAAGAATTGTTTGGTCTG
GTGATTAGAAGAGAAGAGAGTAGATTCTTAAGAGGCCTGCCAATATGGTCCAGTGGCTTGACTTTACCCGGTACCCCTTT
TGCTTTAGTACTGACTTATAATGGTGGTACAAAGGATTTACCTGAATTTTTGGTCTGGCAAATAGCGGTTTGTGATATCT
TTCTTGGTACCTTCTCTTGTTTGATTGACAAACCATGCAGATGCATCCCATCTTCCGTTTGGAACTATGGAAGTTTCTTT
TATGAGGAATTGCACTCTTTCTCGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28063.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis