Browse Element(s) Details


Os.52758.1.S1_at

Description gb:AK069109.1
DB_XREF= gi:32979133
TID=Os.52758.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52758 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007M17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007M17, full insert sequence.
FL= gb:AK069109.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0258011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02530Os.28063.1.S1_at11/112+906668..911506signal peptide peptidase family protein, expressed
LOC_Os02g02530Os.7138.1.A1_x_at2/112+906668..911506signal peptide peptidase family protein, expressed
LOC_Os02g02540Os.21831.1.S1_at11/112+918797..923968Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os02g02550Os.2370.2.S1_at10/112+924473..926622peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g02560Os.2370.1.S1_at11/112+926031..929928UTP-glucose-1-phosphate uridylyltransferase, putative, expressed
LOC_Os02g02570Os.51729.1.S1_at11/112+930260..934270autophagy protein Apg5 family, putative, expressed
LOC_Os02g02580Os.52758.1.S1_at11/112+934591..937786expressed protein
LOC_Os02g02590Os.52649.1.A1_at11/112+938375..941300pentatricopeptide, putative, expressed
LOC_Os02g02600Os.39168.1.S1_at11/112+950728..954690serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os02g02610OsAffx.29313.1.S1_at1/112+956628..960792transposon protein, putative, Mutator sub-class
LOC_Os02g02620Os.51842.1.S1_at11/112+961519..965543sialyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52758.1.S1_at--477--2411Chr02:935320..935344 (25 bp)
AAACACTGAAACTGTGGCGCTCACA
LOC_Os02g02580
Os.52758.1.S1_at--374--1171Chr02:935296..935320 (25 bp)
AGTCACCCAGGCACTTCTATGGAGG
LOC_Os02g02580
Os.52758.1.S1_at--976--2971Chr02:935269..935293 (25 bp)
AATGGGATCACAATGGCAGCTGCGT
LOC_Os02g02580
Os.52758.1.S1_at--428--7451Chr02:935246..935270 (25 bp)
GTGTCTGATCGGCTTCTACAAGAAC
LOC_Os02g02580
Os.52758.1.S1_at--482--5111Chr02:935072..935096 (25 bp)
GAATTCGGCGATTCAGGAGGCCCTG
LOC_Os02g02580
Os.52758.1.S1_at--226--8831Chr02:935049..935073 (25 bp)
TGATTGGCACAGACATCCAGCTGCT
LOC_Os02g02580
Os.52758.1.S1_at--390--3851Chr02:935020..935044 (25 bp)
CTGACCTACATGAGCGAGTTCCGTG
LOC_Os02g02580
Os.52758.1.S1_at--263--7291Chr02:934909..934933 (25 bp)
GTGCCGGACACTTGGGTCGACATCT
LOC_Os02g02580
Os.52758.1.S1_at--558--9031Chr02:934880..934904 (25 bp)
TGCACGGATCTTGCATCACTTCAAG
LOC_Os02g02580
Os.52758.1.S1_at--765--8091Chr02:934824..934848 (25 bp)
GGACCATTGTGGCAACTGCACTGTA
LOC_Os02g02580
Os.52758.1.S1_at--1074--4471Chr02:934717..934741 (25 bp)
GCCTGTAATTCTTTTCTTCTTATGG
LOC_Os02g02580
Target Sequence 
AAACACTGAAACTGTGGCGCTCACAGTCACCCAGGCACTTCTATGGAGGTGAATGGGATCACAATGGCAGCTGCGTGTCT
GATCGGCTTCTACAAGAACACGAGCTCGACTTGTGGNTTCGATCCCAGGTTTGGAGGAGTGAACNAAGAAGCAAGGCTAG
TGAATTCGGCGATTCAGGAGGCCCTGATTGGCACAGACATCCAGCTGCTCAACCTGACCTACATGAGCGAGTTCCGTGCC
GATGCGCATCCGGCAATCTGGCTCGGAAAGAAGGACGCGGTGGCTGTATGGGGGCAGGACTGCATGCATTGGTGCCTTCC
TGGCGTGCCGGACACTTGGGTCGACATCTTGGCTGCACGGATCTTGCATCACTTCAAGCAGGCAAATGGTTGATGACATG
CTGAAGCTTGGACCATTGTGGCAACTGCACTGTAAATGTTGTGTGGGAACAAACACGATGAATGGCATGCTGTATTTAGA
ACAGGAGCATTAAAAAGCTAGGTAGCTACTCTTGTTGCCTGTAATTCTTTTCTTCTTATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52758.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis