Browse Element(s) Details


Os.51842.1.S1_at

Description gb:AK064002.1
DB_XREF= gi:32974020
TID=Os.51842.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51842 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023147K09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-F12, full insert sequence.
FL= gb:AK064002.1 gb:AK101004.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0262011/11sialyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02580Os.52758.1.S1_at11/112+934591..937786expressed protein
LOC_Os02g02590Os.52649.1.A1_at11/112+938375..941300pentatricopeptide, putative, expressed
LOC_Os02g02600Os.39168.1.S1_at11/112+950728..954690serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os02g02610OsAffx.29313.1.S1_at1/112+956628..960792transposon protein, putative, Mutator sub-class
LOC_Os02g02620Os.51842.1.S1_at11/112+961519..965543sialyltransferase, putative, expressed
LOC_Os02g02630OsAffx.24069.1.S1_at11/112+965931..966388hypothetical protein
LOC_Os02g02640OsAffx.24070.1.S1_at10/112+967172..974497NBS-LRR disease resistance protein, putative
LOC_Os02g02650OsAffx.24071.1.S1_at11/112+975623..976077hypothetical protein
LOC_Os02g02660OsAffx.459.1.S1_at9/112+978126..987135retrotransposon protein, putative, unclassified
LOC_Os02g02660Os.23222.1.S1_at1/112+978126..987135retrotransposon protein, putative, unclassified
LOC_Os02g02670OsAffx.24072.1.S1_at11/112+988442..995506NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0008373molecular_functionsialyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51842.1.S1_at--889--2411Chr02:964960..964984 (25 bp)
AAAAAGATCTGTTGTCCGCCATGCT
LOC_Os02g02620
Os.51842.1.S1_at--489--1012Chr02:965021..965045 (25 bp)
AGGTACCCTCTGGAGCGGAATGCTG
LOC_Os02g02620
Os.51842.1.S1_at--797--1591Chr02:965087..965111 (25 bp)
AGCTGCCCATATTCTAGGAGTGGCT
LOC_Os02g02620
Os.51842.1.S1_at--505--5051Chr02:965131..965155 (25 bp)
GCAGAACACTGTACCCCGATGAATG
LOC_Os02g02620
Os.51842.1.S1_at--629--8171Chr02:965183..965207 (25 bp)
GGAACATTGGTGCTCATTTTTGTAC
LOC_Os02g02620
Os.51842.1.S1_at--534--9572Chr02:1005514..1005538 (25 bp)
TCATTTTTGTACAGAGCCGGCAGTT
NONE
Os.51842.1.S1_at--717--6851Chr02:965314..965338 (25 bp)
GTTTGCTGCGCAATGCATCGGGTCG
LOC_Os02g02620
Os.51842.1.S1_at--17--7711Chr02:965333..965357 (25 bp)
GGGTCGCCAAATTTGTCACCTGTAA
LOC_Os02g02620
Os.51842.1.S1_at--104--8091Chr02:965384..965408 (25 bp)
GGAGCCTGTAATTCGTTTGGCAGTA
LOC_Os02g02620
Os.51842.1.S1_at--535--6231Chr02:965432..965456 (25 bp)
GATGGCATCACATTCTGGAACTTAC
LOC_Os02g02620
Os.51842.1.S1_at--258--8151Chr02:965448..965472 (25 bp)
GGAACTTACTATGTCTTAACTTGCA
LOC_Os02g02620
Target Sequence 
AAAAAGATCTGTTGTCCGCCATGCTGCCTTGAAGCATCTGGAGTACATGAGAGGTGCCACCAGGTACCCTCTGGAGCGGA
ATGCTGGGGGTGGTTACCTCTGCATGATCAACGAAAGATAGACATATAGCTGCCCATATTCTAGGAGTGGCTGAATTCAT
GGTACCATGAAGCAGAACACTGTACCCCGATGAATGAATCCTACACGGATAAACTATTTTGAGGGAACATTGGTGCTCAT
TTTTGTACAGAGCCGGCAGTTGAGATGATTTTACGCATGAGTAGTCACAATGTGTTGTAACTTACATTGAAACTACACAA
GTGTTGTGTGATGGAATGAACAGNTAGCGGGGCAGTTTGCTGCGCAATGCATCGGGTCGCCAAATTTGTCACCTGTAACT
AGAAGAAATCTTAACTATGTACATGGAGCCTGTAATTCGTTTGGCAGTAGACATGCACTATTTGATTGGCATGATGGCAT
CACATTCTGGAACTTACTATGTCTTAACTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis