Browse Element(s) Details


OsAffx.24072.1.S1_at

Description tigr:9630.m00175
TID=OsAffx.24072.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NBS-LRR disease resistance protein homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0267011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02620Os.51842.1.S1_at11/112+961519..965543sialyltransferase, putative, expressed
LOC_Os02g02630OsAffx.24069.1.S1_at11/112+965931..966388hypothetical protein
LOC_Os02g02640OsAffx.24070.1.S1_at10/112+967172..974497NBS-LRR disease resistance protein, putative
LOC_Os02g02650OsAffx.24071.1.S1_at11/112+975623..976077hypothetical protein
LOC_Os02g02660OsAffx.459.1.S1_at9/112+978126..987135retrotransposon protein, putative, unclassified
LOC_Os02g02660Os.23222.1.S1_at1/112+978126..987135retrotransposon protein, putative, unclassified
LOC_Os02g02670OsAffx.24072.1.S1_at11/112+988442..995506NB-ARC domain containing protein
LOC_Os02g02680NANA2+999809..1005369Leucine Rich Repeat family protein, expressed
LOC_Os02g02690Os.51108.1.S1_at5/112+1008675..1011816expressed protein
LOC_Os02g02700Os.9153.1.S1_at11/112+1014016..1016213AMP-binding enzyme family protein, expressed
LOC_Os02g02710Os.24694.1.S1_at11/112+1017511..1021998zinc carboxypeptidase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24072.1.S1_at--723--5711Chr02:994970..994994 (25 bp)
GACTGTAAGTCGCTTGCCTCAATCG
LOC_Os02g02670
OsAffx.24072.1.S1_at--952--10431Chr02:995019..995043 (25 bp)
TTAGGCGCTTGACAACACGTGACTC
LOC_Os02g02670
OsAffx.24072.1.S1_at--889--7051Chr02:995051..995075 (25 bp)
GTAACTCCATGTCTACAGCTTGTGT
LOC_Os02g02670
OsAffx.24072.1.S1_at--1078--3771Chr02:995092..995116 (25 bp)
CTCTGGGATCTGGTCTCGACTGGAA
LOC_Os02g02670
OsAffx.24072.1.S1_at--773--10571Chr02:995118..995142 (25 bp)
TTCTATGTACTGATGGTGCCTCTGT
LOC_Os02g02670
OsAffx.24072.1.S1_at--226--8711Chr02:995140..995164 (25 bp)
TGTCCTTACCACGTCACTATGCAAA
LOC_Os02g02670
OsAffx.24072.1.S1_at--164--2091Chr02:995171..995195 (25 bp)
ACATCTCTGCAATCCCTTGTGTTTT
LOC_Os02g02670
OsAffx.24072.1.S1_at--661--691Chr02:995214..995238 (25 bp)
ATGAGCCCATGGTGAGTCTCACAGA
LOC_Os02g02670
OsAffx.24072.1.S1_at--1125--3611Chr02:995282..995306 (25 bp)
CTTGAATTTTCCAACCACCATTATC
LOC_Os02g02670
OsAffx.24072.1.S1_at--127--3591Chr02:995300..995324 (25 bp)
CATTATCTTGAGTCACTTCCTGCAA
LOC_Os02g02670
OsAffx.24072.1.S1_at--866--10631Chr02:995316..995340 (25 bp)
TTCCTGCAAATCTACGAAGCCTCGA
LOC_Os02g02670
Target Sequence 
GACTGTAAGTCGCTTGCCTCAATCGAGGGCTTGCAGTCCATTAGAAACCTTAGGCGCTTGACAACACGTGACTCCCCTGG
TGTAACTCCATGTCTACAGCTTGTGTCGCAGCAGGAAGGGGCCTCTGGGATCTGGTCTCGACTGGAAGTTCTATGTACTG
ATGGTGCCTCTGTCCTTACCACGTCACTATGCAAACATCTCACATCTCTGCAATCCCTTGTGTTTTGGTCGCGATTTAAT
GATGATGAGCCCATGGTGAGTCTCACAGAGGAACAGGAGAGAGCCCTCCAACTTCTCACCTCCCTCCAACAACTTGAATT
TTCCAACCACCATTATCTTGAGTCACTTCCTGCAAATCTACGAAGCCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis