Browse Element(s) Details


Os.9153.1.S1_at

Description gb:AK070181.1
DB_XREF= gi:32980205
TID=Os.9153.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9153 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023043H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043H21, full insert sequence.
FL= gb:AK070181.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0270011/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02670OsAffx.24072.1.S1_at11/112+988442..995506NB-ARC domain containing protein
LOC_Os02g02680NANA2+999809..1005369Leucine Rich Repeat family protein, expressed
LOC_Os02g02690Os.51108.1.S1_at5/112+1008675..1011816expressed protein
LOC_Os02g02700Os.9153.1.S1_at11/112+1014016..1016213AMP-binding enzyme family protein, expressed
LOC_Os02g02710Os.24694.1.S1_at11/112+1017511..1021998zinc carboxypeptidase family protein, putative, expressed
LOC_Os02g02720Os.12213.1.S1_at11/112+1022080..1024751Syntaxin 51, putative, expressed
LOC_Os02g02730OsAffx.11867.1.S1_x_at11/112+1029925..1034242expressed protein
LOC_Os02g02730Os.55372.1.S1_x_at1/112+1029925..1034242expressed protein
LOC_Os02g02740Os.25440.1.S1_x_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740OsAffx.11868.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740Os.25440.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02750Os.25097.1.S1_at11/112+1040539..1045797CDP-alcohol phosphatidyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006083biological_processacetate metabolism
GO:0006097biological_processglyoxylate cycle
GO:0005777cellular_componentperoxisome
GO:0003987molecular_functionacetate-CoA ligase activity
GO:0016208molecular_functionAMP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9153.1.S1_at--496--1451Chr02:1015963..1015987 (25 bp)
AGAAGTTCGAGCTGCGGGCGCGCGC
LOC_Os02g02700
Os.9153.1.S1_at--49--1591Chr02:1016041..1016065 (25 bp)
AGCTCTGAATGAATTTGTTTGCGTC
LOC_Os02g02700
Os.9153.1.S1_at--371--5231Chr02:1016051..1016075 (25 bp)
GAATTTGTTTGCGTCAGCTGCTGAC
LOC_Os02g02700
Os.9153.1.S1_at--894--4772Chr03:35593756..35593775 (20 bp)
GCTGCTGACGACTGCAATGCAACTT
NONE
Os.9153.1.S1_at--671--3011Chr02:1016082..1016106 (25 bp)
AATGCAACTTCGATGCAGCATGCGT
LOC_Os02g02700
Os.9153.1.S1_at--1030--2051Chr02:1016088..1016112 (25 bp)
ACTTCGATGCAGCATGCGTGTGTGT
LOC_Os02g02700
Os.9153.1.S1_at--599--3991Chr02:1016104..1016128 (25 bp)
CGTGTGTGTGCCTGTGGAATCTCGA
LOC_Os02g02700
Os.9153.1.S1_at--439--7291Chr02:1016111..1016135 (25 bp)
GTGCCTGTGGAATCTCGAGACAACA
LOC_Os02g02700
Os.9153.1.S1_at--841--8171Chr02:1016119..1016143 (25 bp)
GGAATCTCGAGACAACAACCAAAGA
LOC_Os02g02700
Os.9153.1.S1_at--351--7291Chr02:1016181..1016205 (25 bp)
GTGCGAGAACAGGTTGGTGTCCTTT
LOC_Os02g02700
Os.9153.1.S1_at--271--2131Chr02:1016189..1016213 (25 bp)
ACAGGTTGGTGTCCTTTGGCTGTCA
LOC_Os02g02700
Target Sequence 
AGAAGTTCGAGCTGCGGGCGCGCGCCAAGGCCATGGGCACCGTCCCGGCGGCGGCGGCGGCGAAGTCGAAGAGGAGCAAG
CTCTGAATGAATTTGTTTGCGTCAGCTGCTGACGACTGCAATGCAACTTCGATGCAGCATGCGTGTGTGTGCCTGTGGAA
TCTCGAGACAACAACCAAAGAAAAAAAATAAAAAAATCATGATTTGTTGTGATNANTNGTGCGAGAACAGGTTGGTGTCC
TTTGGCTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis