Browse Element(s) Details


Os.12213.1.S1_at

Description gb:AK102774.1
DB_XREF= gi:32987983
TID=Os.12213.1
CNT=46
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12213 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107H09, full insert sequence.
FL= gb:AK060055.1 gb:AK102774.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0272011/11Syntaxin 51, putative, expressed
LOC_Os07g052402/11retrotransposon protein, putative, unclassified, expressed
LOC_Os08g176001/11Syntaxin 51, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02680NANA2+999809..1005369Leucine Rich Repeat family protein, expressed
LOC_Os02g02690Os.51108.1.S1_at5/112+1008675..1011816expressed protein
LOC_Os02g02700Os.9153.1.S1_at11/112+1014016..1016213AMP-binding enzyme family protein, expressed
LOC_Os02g02710Os.24694.1.S1_at11/112+1017511..1021998zinc carboxypeptidase family protein, putative, expressed
LOC_Os02g02720Os.12213.1.S1_at11/112+1022080..1024751Syntaxin 51, putative, expressed
LOC_Os02g02730OsAffx.11867.1.S1_x_at11/112+1029925..1034242expressed protein
LOC_Os02g02730Os.55372.1.S1_x_at1/112+1029925..1034242expressed protein
LOC_Os02g02740Os.25440.1.S1_x_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740OsAffx.11868.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740Os.25440.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02750Os.25097.1.S1_at11/112+1040539..1045797CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os02g02770Os.52476.1.S1_at11/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02770Os.52476.1.S2_at10/112+1047595..1050120pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
GO:0045045biological_processsecretory pathway
GO:0010008cellular_componentendosome membrane
GO:0005484molecular_functionSNAP receptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12213.1.S1_at--720--5372Chr08:10756454..10756577 (25 bp)
GAAGAACTTACCCTGCATACAAGAT
LOC_Os08g17600
Os.12213.1.S1_at--798--2671Chr02:1022464..1022488 (25 bp)
AAGCGCGTCAAAGGTGGCTGCTCGT
LOC_Os02g02720
Os.12213.1.S1_at--1147--4271Chr02:1022432..1022456 (25 bp)
CCTGCTGATATCTGTCGTTGCTATA
LOC_Os02g02720
Os.12213.1.S1_at--849--10712Chr07:2360457..2360478 (22 bp)
TTGCTATAGTGTTTCTTGCGGTCAT
LOC_Os07g05240
Os.12213.1.S1_at--956--10611Chr02:1022400..1022424 (25 bp)
TTGCGGTCATTGCTTGGCTTCTCAT
LOC_Os02g02720
Os.12213.1.S1_at--275--1731Chr02:1022370..1022394 (25 bp)
ACCTGTAACCTGTGTCTAACTCAAA
LOC_Os02g02720
Os.12213.1.S1_at--902--2332Chr07:2360588..2360612 (25 bp)
AAAGATGTGGATGCTCCCATCTCAT
LOC_Os07g05240
Os.12213.1.S1_at--748--5151Chr02:1022219..1022243 (25 bp)
GCAACGTTGCATTGACACTTGCCAA
LOC_Os02g02720
Os.12213.1.S1_at--353--10191Chr02:1022187..1022211 (25 bp)
TATAGAGCGTATTGCCTTTCTGTCG
LOC_Os02g02720
Os.12213.1.S1_at--1118--71Chr02:1022177..1022201 (25 bp)
ATTGCCTTTCTGTCGTAATCTTTTC
LOC_Os02g02720
Os.12213.1.S1_at--920--2231Chr02:1022150..1022174 (25 bp)
AAATTCTTATTCTTGCGAGACTTGA
LOC_Os02g02720
Target Sequence 
GAAGAACTTACCCTGCATACAAGATTGATTGATGATTTGGATGATTATGTTGATGTTACAAACTCACGTCTTCAGCGCGT
GCAAAAGAGGCTTGCTATTCTGAATAAGCGCGTCAAAGGTGGCTGCTCGTGCATGGCCCTGCTGATATCTGTCGTTGCTA
TAGTGTTTCTTGCGGTCATTGCTTGGCTTCTCATCAAGCACCTGTAACCTGTGTCTAACTCAAATCAGTTTGAAATGTGC
AGTCTTTCAAAGATGTGGATGCTCCCATCTCATCTCTGTTTCGTGAGAGTGTGGAAAATGGAATATAATTGCAACAAATC
TTCGTTCAGAAGATGTGCAAAAAGTATGTTGCAACGTTGCATTGACACTTGCCAACAATTTGTATAGAGCGTATTGCCTT
TCTGTCGTAATCTTTTCANAAATTCTTATTCTTGCGAGACTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis