Browse Element(s) Details


Os.52476.1.S1_at

Description gb:AK101590.1
DB_XREF= gi:32986799
TID=Os.52476.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033051C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033051C08, full insert sequence.
FL= gb:AK101590.1 gb:AK067383.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0277011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02720Os.12213.1.S1_at11/112+1022080..1024751Syntaxin 51, putative, expressed
LOC_Os02g02730OsAffx.11867.1.S1_x_at11/112+1029925..1034242expressed protein
LOC_Os02g02730Os.55372.1.S1_x_at1/112+1029925..1034242expressed protein
LOC_Os02g02740Os.25440.1.S1_x_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740OsAffx.11868.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740Os.25440.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02750Os.25097.1.S1_at11/112+1040539..1045797CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os02g02770Os.52476.1.S1_at11/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02770Os.52476.1.S2_at10/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02780Os.26226.1.S1_at10/112+1050786..1056830protein kinase family protein, putative, expressed
LOC_Os02g02790Os.56801.1.S1_at11/112+1061877..1066211C2 domain containing protein, expressed
LOC_Os02g02800Os.52287.1.S1_at10/112+1067045..1069130LOC124512 protein, putative, expressed
LOC_Os02g02810OsAffx.2489.1.S1_s_at11/112+1069636..1072087expressed protein
LOC_Os02g02810OsAffx.2489.1.S1_at10/112+1069636..1072087expressed protein
LOC_Os02g02810Os.52287.2.S1_at1/112+1069636..1072087expressed protein
LOC_Os02g02820Os.50000.1.S1_at11/112+1073553..1076776Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52476.1.S1_at--1061--2611Chr02:1048857..1048881 (25 bp)
AACCTCCATGGATTCAGCACAATTG
LOC_Os02g02770
Os.52476.1.S1_at--599--1491Chr02:1048842..1048866 (25 bp)
AGCACAATTGCAGCCTATGTTTTGA
LOC_Os02g02770
Os.52476.1.S1_at--750--4211Chr02:1048786..1048810 (25 bp)
CCGCGCATTGCCATTGGAGGTGTCA
LOC_Os02g02770
Os.52476.1.S1_at--628--8291Chr02:1048752..1048776 (25 bp)
GGCATTGGCAAGCACAGCGATGTCA
LOC_Os02g02770
Os.52476.1.S1_at--496--2431Chr02:1048650..1048674 (25 bp)
AACAAAGGCCGGCTTGTCGCCAAGC
LOC_Os02g02770
Os.52476.1.S1_at--377--8051Chr02:1048573..1048597 (25 bp)
GGAGAGCACAGATCAATCACCTAAT
LOC_Os02g02770
Os.52476.1.S1_at--146--7631Chr02:1048547..1048571 (25 bp)
GGGACAACCAGCAACCATTTTTACT
LOC_Os02g02770
Os.52476.1.S1_at--867--1011Chr02:1048499..1048523 (25 bp)
AGGTTCTGTCACCATTTCTGCAGTT
LOC_Os02g02770
Os.52476.1.S1_at--12--5971Chr02:1048455..1048479 (25 bp)
GAGAAGCACCTCTCTTATGTAGGTT
LOC_Os02g02770
Os.52476.1.S1_at--425--7931Chr02:1048410..1048434 (25 bp)
GGATAGTTCAGCATCTTTGCCATGC
LOC_Os02g02770
Os.52476.1.S1_at--462--571Chr02:1048350..1048374 (25 bp)
ATCCTAAGTTCTAGTTCTGATGCCG
LOC_Os02g02770
Target Sequence 
AACCTCCATGGATTCAGCACAATTGCAGCCTATGTTTTGATTTTGCAGTGGGTGGATGCGATGAAGGCGCGCCGCGCATT
GCCATTGGAGGTGTCAGTGGTGTGTGGCATTGGCAAGCACAGCGATGTCAGAGGTGAGCCCAAGGTGAGGGAGCTGGCTC
AGGAGGTTCTGAGCAGGATGGGGAGCCCCCTGAGGCTGTCCATGAGGAACAAAGGCCGGCTTGTCGCCAAGCGCGACAGG
GTGAAGCAATGGCTGGCCACTGACTGGAGCTCTCCGGTGGATGAGGAGAGCACAGATCAATCACCTAATGGGGACAACCA
GCAACCATTTTTACTTACACTCATGAGAAAACTAGGACAGGTTCTGTCACCATTTCTGCAGTTCTCAAAGGGTAAAGCAT
AAGAGAAGCACCTCTCTTATGTAGGTTTTTCAGATAGTTTGGTCTTTGGATAGTTCAGCATCTTTGCCATGCTGTAGATT
GATACAAGCNTTGTCTTGGTCTAGTGAATCCTAAGTTCTAGTTCTGATGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis