Browse Element(s) Details


Os.26226.1.S1_at

Description gb:AK103704.1
DB_XREF= gi:32988913
TID=Os.26226.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26226 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033136N12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136N12, full insert sequence.
FL= gb:AK103704.1 gb:AK060220.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0278010/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02730OsAffx.11867.1.S1_x_at11/112+1029925..1034242expressed protein
LOC_Os02g02730Os.55372.1.S1_x_at1/112+1029925..1034242expressed protein
LOC_Os02g02740Os.25440.1.S1_x_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740OsAffx.11868.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740Os.25440.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02750Os.25097.1.S1_at11/112+1040539..1045797CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os02g02770Os.52476.1.S1_at11/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02770Os.52476.1.S2_at10/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02780Os.26226.1.S1_at10/112+1050786..1056830protein kinase family protein, putative, expressed
LOC_Os02g02790Os.56801.1.S1_at11/112+1061877..1066211C2 domain containing protein, expressed
LOC_Os02g02800Os.52287.1.S1_at10/112+1067045..1069130LOC124512 protein, putative, expressed
LOC_Os02g02810OsAffx.2489.1.S1_s_at11/112+1069636..1072087expressed protein
LOC_Os02g02810OsAffx.2489.1.S1_at10/112+1069636..1072087expressed protein
LOC_Os02g02810Os.52287.2.S1_at1/112+1069636..1072087expressed protein
LOC_Os02g02820Os.50000.1.S1_at11/112+1073553..1076776Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g02830Os.22788.1.S1_at11/112+1078475..1079652Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os02g02840Os.2448.1.S1_at11/112+1080513..1084282RAC-like GTP binding protein RHO1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26226.1.S1_at--676--6471Chr02:1052373..1052397 (25 bp)
GATACCCTATGAGTACCTAACACCA
LOC_Os02g02780
Os.26226.1.S1_at--316--5311NONE
GAAGGGCCTTAGACCAACAATTCCG
NONE
Os.26226.1.S1_at--797--3131Chr02:1051474..1051498 (25 bp)
AATTCCGAAAGATACGCACCCCAAG
LOC_Os02g02780
Os.26226.1.S1_at--1012--3231Chr02:1051453..1051477 (25 bp)
CAAGCTGTCTGAGCTGCTTCAGAAA
LOC_Os02g02780
Os.26226.1.S1_at--892--6031Chr02:1051418..1051442 (25 bp)
GAGATCCTGCTGAAAGGCCTGACTT
LOC_Os02g02780
Os.26226.1.S1_at--394--6051Chr02:1051380..1051404 (25 bp)
GAGATTCTTCAGAGACTCCCCAAAG
LOC_Os02g02780
Os.26226.1.S1_at--1021--1591Chr02:1051163..1051187 (25 bp)
AGCTGATACCGAGGGTCGCCAGAAA
LOC_Os02g02780
Os.26226.1.S1_at--343--931Chr02:1051134..1051158 (25 bp)
AGGCAGGATTTCTTTCAGCATTGAA
LOC_Os02g02780
Os.26226.1.S1_at--670--4971Chr02:1051074..1051098 (25 bp)
GCATCATTCAATTGTAGCATCCCAC
LOC_Os02g02780
Os.26226.1.S1_at--45--6891Chr02:1051005..1051029 (25 bp)
GTATTTCTTACGTTGTTGCAGCTTT
LOC_Os02g02780
Os.26226.1.S1_at--921--6531Chr02:1050817..1050841 (25 bp)
GATTTTCTCCTCCTATGTTGTAGAT
LOC_Os02g02780
Target Sequence 
GATACCCTATGAGTACCTAACACCACTACANGCAGCCATAGGTGTTGTTCAGAAGGGCCTTAGACCAACAATTCCGAAAG
ATACGCACCCCAAGCTGTCTGAGCTGCTTCAGAAATGCTGGCATAGAGATCCTGCTGAAAGGCCTGACTTCTCCCAGATA
CTGGAGATTCTTCAGAGACTCCCCAAAGAGGTGAGAGCTGATACCGAGGGTCGCCAGAAATCAAAGGCAGGATTTCTTTC
AGCATTGAAGAGAAACCACTGAAAGTAGCTTATACAATGTTGGTGCATCATTCAATTGTAGCATCCCACAACAAGAGGGA
AGCGCATTGTGGTGTACAGTGATTAAAAAAAAAGTATTTCTTACGTTGTTGCAGCTTTGTTTTTTTTGCTTATTTAGTTT
TTTTTTCAGCTTTTTGGTTTCTTTTGCTGTTGTTTTTCTTGTTCTAGTTTTGTTGCATTAATGAGAACAAGTATAGAAAA
AGGAATGTGCTGAAAAGAGTTGTACAAATTGATCCTGTTTTNTTGTTCATGTCTGAATTCCGATTTTCTCCTCCTATGTT
GTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis