Browse Element(s) Details


Os.56801.1.S1_at

Description gb:AK110433.1
DB_XREF= gi:32995642
TID=Os.56801.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56801 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-166-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-166-B11, full insert sequence.
FL= gb:AK110433.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0279011/11C2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02740Os.25440.1.S1_x_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740OsAffx.11868.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740Os.25440.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02750Os.25097.1.S1_at11/112+1040539..1045797CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os02g02770Os.52476.1.S1_at11/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02770Os.52476.1.S2_at10/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02780Os.26226.1.S1_at10/112+1050786..1056830protein kinase family protein, putative, expressed
LOC_Os02g02790Os.56801.1.S1_at11/112+1061877..1066211C2 domain containing protein, expressed
LOC_Os02g02800Os.52287.1.S1_at10/112+1067045..1069130LOC124512 protein, putative, expressed
LOC_Os02g02810OsAffx.2489.1.S1_s_at11/112+1069636..1072087expressed protein
LOC_Os02g02810OsAffx.2489.1.S1_at10/112+1069636..1072087expressed protein
LOC_Os02g02810Os.52287.2.S1_at1/112+1069636..1072087expressed protein
LOC_Os02g02820Os.50000.1.S1_at11/112+1073553..1076776Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g02830Os.22788.1.S1_at11/112+1078475..1079652Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os02g02840Os.2448.1.S1_at11/112+1080513..1084282RAC-like GTP binding protein RHO1, putative, expressed
LOC_Os02g02850OsAffx.24073.1.S1_at9/112+1086750..1089571C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os02g02860Os.7227.1.S1_at11/112+1090375..1095969Glutamyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0012501biological_processprogrammed cell death
GO:0005886cellular_componentplasma membrane
GO:0015630cellular_componentmicrotubule cytoskeleton
GO:0004630molecular_functionphospholipase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56801.1.S1_at--500--1051Chr02:1065757..1065781 (25 bp)
AGGTGTTCGGCTTCAGGATGTTGCT
LOC_Os02g02790
Os.56801.1.S1_at--70--4291Chr02:1065926..1065950 (25 bp)
CCTCATGAGGTACCCGGTGGACGTC
LOC_Os02g02790
Os.56801.1.S1_at--304--3231Chr02:1065962..1065986 (25 bp)
CAAGATCAGCGAGTTGCGCGGGCAC
LOC_Os02g02790
Os.56801.1.S1_at--672--4671Chr02:1066006..1066030 (25 bp)
GCGGGAGGATCCTTGGCTCCACCAA
LOC_Os02g02790
Os.56801.1.S1_at--605--3271Chr02:1066028..1066052 (25 bp)
CAACAACAACTACTGGGATTATCTC
LOC_Os02g02790
Os.56801.1.S1_at--622--7931Chr02:1066043..1066067 (25 bp)
GGATTATCTCACCATGTAGGCATGT
LOC_Os02g02790
Os.56801.1.S1_at--534--6931Chr02:1066058..1066082 (25 bp)
GTAGGCATGTAGCTGCCTCTGCATT
LOC_Os02g02790
Os.56801.1.S1_at--921--3831Chr02:1066076..1066100 (25 bp)
CTGCATTCCCAAATTACTATTCGGA
LOC_Os02g02790
Os.56801.1.S1_at--976--7611Chr02:1066110..1066134 (25 bp)
GGGACTTTCTAGGTGTCTTTTGACA
LOC_Os02g02790
Os.56801.1.S1_at--1151--2591Chr02:1066140..1066164 (25 bp)
AACCTCCCTAAATCTTGCAAATTAT
LOC_Os02g02790
Os.56801.1.S1_at--385--10431Chr02:1066161..1066185 (25 bp)
TTATGAACCGTTGGATCAATCGTGC
LOC_Os02g02790
Target Sequence 
AGGTGTTCGGCTTCAGGATGTTGCTGTGGGAGGAGCACCTGGGCAGCAGCGAGTGGCGGGAGCTGAGGTCGCCGGAGTCG
CCGGAGTGCGTGAAGCGGGTGAACGAGATAGCGGCGGAGAACTGGAGGAGGTACGCCGCCGACGACGACGATGTCGCCAT
GCAGGGGCACCTCATGAGGTACCCGGTGGACGTCGGCGACGACGGCAAGATCAGCGAGTTGCGCGGGCACGAGTTCTTCC
CCGACGTCGGCGGGAGGATCCTTGGCTCCACCAACAACAACTACTGGGATTATCTCACCATGTAGGCATGTAGCTGCCTC
TGCATTCCCAAATTACTATTCGGATTAATATATGGGACTTTCTAGGTGTCTTTTGACAGAAAAAACCTCCCTAAATCTTG
CAAATTATGAACCGTTGGATCAATCGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis