Browse Element(s) Details


Os.22788.1.S1_at

Description gb:AK120237.1
DB_XREF= gi:37989860
TID=Os.22788.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22788 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043N18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043N18, full insert sequence.
FL= gb:AK120237.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0283011/11Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02780Os.26226.1.S1_at10/112+1050786..1056830protein kinase family protein, putative, expressed
LOC_Os02g02790Os.56801.1.S1_at11/112+1061877..1066211C2 domain containing protein, expressed
LOC_Os02g02800Os.52287.1.S1_at10/112+1067045..1069130LOC124512 protein, putative, expressed
LOC_Os02g02810OsAffx.2489.1.S1_s_at11/112+1069636..1072087expressed protein
LOC_Os02g02810OsAffx.2489.1.S1_at10/112+1069636..1072087expressed protein
LOC_Os02g02810Os.52287.2.S1_at1/112+1069636..1072087expressed protein
LOC_Os02g02820Os.50000.1.S1_at11/112+1073553..1076776Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g02830Os.22788.1.S1_at11/112+1078475..1079652Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os02g02840Os.2448.1.S1_at11/112+1080513..1084282RAC-like GTP binding protein RHO1, putative, expressed
LOC_Os02g02850OsAffx.24073.1.S1_at9/112+1086750..1089571C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os02g02860Os.7227.1.S1_at11/112+1090375..1095969Glutamyl-tRNA synthetase, putative, expressed
LOC_Os02g02870Os.4724.1.S1_at11/112+1103043..1104294Zinc knuckle family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22788.1.S1_at--722--6171Chr02:1078827..1078851 (25 bp)
GAGGAGTGTTCCTGGTGACCATCCA
LOC_Os02g02830
Os.22788.1.S1_at--901--5171Chr02:1079056..1079080 (25 bp)
GCAATGGCAACATCTGCCTTGACAT
LOC_Os02g02830
Os.22788.1.S1_at--85--2931Chr02:1079085..1079109 (25 bp)
AAGGACCAGTGGAGCCCAGCTCTCA
LOC_Os02g02830
Os.22788.1.S1_at--194--471Chr02:1079112..1079243 (25 bp)
ATCTCCAAGGTTCTTCTGTCGATCT
LOC_Os02g02830
Os.22788.1.S1_at--880--9171Chr02:1079283..1079307 (25 bp)
TGCCGGAGATCGCTCATATGTGCAA
LOC_Os02g02830
Os.22788.1.S1_at--1005--251Chr02:1079298..1079322 (25 bp)
ATATGTGCAAGACTGATCGCCTCAG
LOC_Os02g02830
Os.22788.1.S1_at--970--6471Chr02:1079322..1079346 (25 bp)
GATACGAATCCACCGCAAGAGGCTG
LOC_Os02g02830
Os.22788.1.S1_at--419--851Chr02:1079341..1079365 (25 bp)
AGGCTGGACGCAGAAGTACGCCATG
LOC_Os02g02830
Os.22788.1.S1_at--897--9951Chr02:1079357..1079381 (25 bp)
TACGCCATGGGCTAAGCTTAGCTGC
LOC_Os02g02830
Os.22788.1.S1_at--569--3071Chr02:1079438..1079462 (25 bp)
AATCAGTCAATCACCAGCATGTCGA
LOC_Os02g02830
Os.22788.1.S1_at--438--3551Chr02:1079583..1079607 (25 bp)
CATCGTCTTCTTGGTGAGGAGGAAT
LOC_Os02g02830
Target Sequence 
GAGGAGTGTTCCTGGTGACCATCCACTTCCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGGTG
TTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTC
CAAGGTTCTTCTGTCGATCTGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGT
GCAAGACTGATCGCCTCAGATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGCAA
GCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAGGGGACAATCAGTCAATCACCAGCATGTCGAT
TAGAATTCAGAAATATAGATCGTGCCATAAAAAAAGATAGTAATAATTCTTGCTTGCAATTATTAGGATTGTTGTTGCAA
ATCTGAATCATCGTTATCATCTAACCTATAATCAAAAACCATCGTCTTCTTGGTGAGGAGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis