Browse Element(s) Details


Os.7227.1.S1_at

Description gb:AK099931.1
DB_XREF= gi:32985140
TID=Os.7227.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.7227 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118M14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118M14, full insert sequence.
FL= gb:AK099931.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0286011/11Glutamyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02790Os.56801.1.S1_at11/112+1061877..1066211C2 domain containing protein, expressed
LOC_Os02g02800Os.52287.1.S1_at10/112+1067045..1069130LOC124512 protein, putative, expressed
LOC_Os02g02810OsAffx.2489.1.S1_s_at11/112+1069636..1072087expressed protein
LOC_Os02g02810OsAffx.2489.1.S1_at10/112+1069636..1072087expressed protein
LOC_Os02g02810Os.52287.2.S1_at1/112+1069636..1072087expressed protein
LOC_Os02g02820Os.50000.1.S1_at11/112+1073553..1076776Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g02830Os.22788.1.S1_at11/112+1078475..1079652Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os02g02840Os.2448.1.S1_at11/112+1080513..1084282RAC-like GTP binding protein RHO1, putative, expressed
LOC_Os02g02850OsAffx.24073.1.S1_at9/112+1086750..1089571C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os02g02860Os.7227.1.S1_at11/112+1090375..1095969Glutamyl-tRNA synthetase, putative, expressed
LOC_Os02g02870Os.4724.1.S1_at11/112+1103043..1104294Zinc knuckle family protein, expressed
LOC_Os02g02880Os.11422.1.S1_at11/112+1106261..1111999expressed protein
LOC_Os02g02890Os.4157.1.S1_s_at11/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.4157.1.S1_at11/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.57490.1.S1_x_at10/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.25594.1.S1_at1/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007005biological_processmitochondrion organization and biogenesis
GO:0009658biological_processchloroplast organization and biogenesis
GO:0043039biological_processtRNA aminoacylation
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004818molecular_functionglutamate-tRNA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7227.1.S1_at--356--6671Chr02:1091297..1091321 (25 bp)
GTTGCATCAGGACTCATTTCTGCTT
LOC_Os02g02860
Os.7227.1.S1_at--279--7631Chr02:1090863..1090887 (25 bp)
GGGAAAGTCACTCTTTATGCCGCTC
LOC_Os02g02860
Os.7227.1.S1_at--394--8511Chr02:1090824..1090848 (25 bp)
TGGCAAGCTTCATGGGCCTGACATG
LOC_Os02g02860
Os.7227.1.S1_at--961--6931Chr02:1090790..1090814 (25 bp)
GTAGTCCTCATACACAAAGCCGGCA
LOC_Os02g02860
Os.7227.1.S1_at--1056--2351Chr02:1090775..1090799 (25 bp)
AAAGCCGGCACCTGTGGAGCGGTCA
LOC_Os02g02860
Os.7227.1.S1_at--652--7091Chr02:1090754..1090778 (25 bp)
GTCACTCAGCAATCCGGTTTCGTAA
LOC_Os02g02860
Os.7227.1.S1_at--825--971Chr02:1090675..1090699 (25 bp)
AGGAGCAAGAGTCCCCAGCTGAAAC
LOC_Os02g02860
Os.7227.1.S1_at--445--8811Chr02:1090559..1090583 (25 bp)
TGTTCCATTTTACTACCCATTTCTA
LOC_Os02g02860
Os.7227.1.S1_at--157--2031Chr02:1090548..1090572 (25 bp)
ACTACCCATTTCTACAGTTGTGAGG
LOC_Os02g02860
Os.7227.1.S1_at--984--4891Chr02:1090480..1090504 (25 bp)
GCTTAGCTGTTCTGTAATTGTCGAT
LOC_Os02g02860
Os.7227.1.S1_at--418--4071Chr02:1090428..1090452 (25 bp)
CGAGGTGATGCTGCTTGTCTTTTTC
LOC_Os02g02860
Target Sequence 
GTTGCATCAGGACTCATTTCTGCTTATGATAGCGGTGAACTTTGTCAAGCNCTAGCTGAGGGCCGTGATGGTTGGCAGAA
GTGGGTGAAAATTTTTGGCAAATCACTTAAAAGAAAGGGAAAGTCACTCTTTATGCCGCTCCGTGTACTGCTGACTGGCA
AGCTTCATGGGCCTGACATGGGCGGCACCGTAGTCCTCATACACAAAGCCGGCACCTGTGGAGCGGTCACTCAGCAATCC
GGTTTCGTAAATCTCGACGAGAGGTTCAGAATCCTGAAGGAGGTGGAGTGGGAGTCACTGGTACAGGAGCAAGAGTCCCC
AGCTGAAACTGCCGTTCCTGCTTCTCNATAGGCTGCAAGATTCAGATCAATCAGGGAGAGTTTTTGTTTTCTGTAATACT
CCNACTATAAAGCATAGGATATGTTCCATTTTACTACCCATTTCTACAGTTGTGAGGAAACTATAGTTTCGGTTTTCTGT
AGTTAATAAAGCGGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGGCANAGGTTACGAGGTGA
TGCTGCTTGTCTTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis