Browse Element(s) Details


Os.25594.1.S1_at

Description gb:AF263542.1
DB_XREF= gi:10334782
TID=Os.25594.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25594 (NCBI UniGene Cluster)
UG_TITLE=Clone 19CAC microsatellite sequence
DEF=Oryza sativa clone 19CAC microsatellite sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g028901/11Peptidyl-prolyl cis-trans isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02860Os.7227.1.S1_at11/112+1090375..1095969Glutamyl-tRNA synthetase, putative, expressed
LOC_Os02g02870Os.4724.1.S1_at11/112+1103043..1104294Zinc knuckle family protein, expressed
LOC_Os02g02880Os.11422.1.S1_at11/112+1106261..1111999expressed protein
LOC_Os02g02890Os.4157.1.S1_s_at11/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.4157.1.S1_at11/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.57490.1.S1_x_at10/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.25594.1.S1_at1/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02900OsAffx.11869.1.S1_at11/112+1123522..1125414expressed protein
LOC_Os02g02910Os.52234.1.S1_at11/112+1126060..1132613expressed protein
LOC_Os02g02910Os.6440.1.S1_at1/112+1126060..1132613expressed protein
LOC_Os02g02920Os.8939.1.S1_s_at11/112+1134727..1139272HVA22-like protein i, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0007165biological_processsignal transduction
GO:0005829cellular_componentcytosol
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0016018molecular_functioncyclosporin A binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25594.1.S1_at--1023--6891NONE
GTATCAGTCGTCTTGGAATTCTTCG
NONE
Os.25594.1.S1_at--1020--10831NONE
TTGGAATTCTTCGAATCCCTAAATA
NONE
Os.25594.1.S1_at--1026--8131NONE
GGAATTCTTCGAATCCCTAAATAAG
NONE
Os.25594.1.S1_at--300--5211NONE
GAATTCTTCGAATCCCTAAATAAGG
NONE
Os.25594.1.S1_at--1144--10531NONE
TTCTTCGAATCCCTAAATAAGGAAG
NONE
Os.25594.1.S1_at--795--9351NONE
TCGAATCCCTAAATAAGGAAGAAGT
NONE
Os.25594.1.S1_at--986--9211NONE
TCCTTTTAAGGAGTTCGTGTCGTGT
NONE
Os.25594.1.S1_at--1156--3811NONE
CTGCGATCCTTCTGGGGGTGGGTTA
NONE
Os.25594.1.S1_at--176--5491NONE
GAACATTGTGGGATCCGTGGATTTT
NONE
Os.25594.1.S1_at--509--2511NONE
AACATTGTGGGATCCGTGGATTTTC
NONE
Os.25594.1.S1_at--253--31Chr02:1116945..1116965 (21 bp)
ATTGTGGGATCCGTGGATTTTCTGT
LOC_Os02g02890
Target Sequence 
GTATCAGTCGTCTTGGAATTCTTCGAATCCCTAAATAAGGAAGAAGTGGTGGTGGGGTTAGTCCTTTTAAGGAGTTCGTG
TCGTGTTGGTGAGAAGAGATCGCCCATGGTTTGGTTGGATTAGGCGGAGTTCTTGGATCGATTCGGTGGAGTTGGATCTG
CGATCCTTCTGGGGGTGGGTTATAAATCTTAATTCGTGTCGCTGCTTCTATGATATCGCTATCAATCAATGAGAACATTG
TGGGATCCGTGGATTTTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25594.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis