Browse Element(s) Details


Os.57490.1.S1_x_at

Description gb:D42545
DB_XREF= gi:3106820
DB_XREF=D42545
CLONE=T064
TID=Os.57490.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57490 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for cyclophilin, partial sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0289010/11Peptidyl-prolyl cis-trans isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02860Os.7227.1.S1_at11/112+1090375..1095969Glutamyl-tRNA synthetase, putative, expressed
LOC_Os02g02870Os.4724.1.S1_at11/112+1103043..1104294Zinc knuckle family protein, expressed
LOC_Os02g02880Os.11422.1.S1_at11/112+1106261..1111999expressed protein
LOC_Os02g02890Os.4157.1.S1_s_at11/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.4157.1.S1_at11/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.57490.1.S1_x_at10/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.25594.1.S1_at1/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02900OsAffx.11869.1.S1_at11/112+1123522..1125414expressed protein
LOC_Os02g02910Os.52234.1.S1_at11/112+1126060..1132613expressed protein
LOC_Os02g02910Os.6440.1.S1_at1/112+1126060..1132613expressed protein
LOC_Os02g02920Os.8939.1.S1_s_at11/112+1134727..1139272HVA22-like protein i, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0007165biological_processsignal transduction
GO:0005829cellular_componentcytosol
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0016018molecular_functioncyclosporin A binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57490.1.S1_x_at--1094--1411Chr02:1116109..1116133 (25 bp)
AGAAAAAATATTCCCCATCTGTGAA
LOC_Os02g02890
Os.57490.1.S1_x_at--321--231Chr02:1116116..1116140 (25 bp)
ATATTCCCCATCTGTGAAATTCGCA
LOC_Os02g02890
Os.57490.1.S1_x_at--1034--71Chr02:1116118..1116142 (25 bp)
ATTCCCCATCTGTGAAATTCGCAAA
LOC_Os02g02890
Os.57490.1.S1_x_at--616--5591Chr02:1116131..1116155 (25 bp)
GAAATTCGCAAAACCCTAGCGCGGC
LOC_Os02g02890
Os.57490.1.S1_x_at--1071--71Chr02:1116134..1116156 (23 bp)
ATTCGCAAAACCCTAGCGCGGCGCG
LOC_Os02g02890
Os.57490.1.S1_x_at--818--9991Chr02:1116147..1116172 (25 bp)
TAGCGCGGCGCGATGTCGAACACGA
LOC_Os02g02890
Os.57490.1.S1_x_at--508--2471Chr02:1116166..1116190 (25 bp)
AACACGAGGGTGTTCTTCGACATGA
LOC_Os02g02890
Os.57490.1.S1_x_at--1112--6131Chr02:1116171..1116195 (25 bp)
GAGGGTGTTCTTCGACATGACCGTC
LOC_Os02g02890
Os.57490.1.S1_x_at--385--6731Chr02:1116177..1116201 (25 bp)
GTTCTTCGACATGACCGTCGGCGGA
LOC_Os02g02890
Os.57490.1.S1_x_at--594--9351Chr02:1116182..1116207 (25 bp)
TCGACATGACCGTCGGCGGAGTCCG
LOC_Os02g02890
Os.57490.1.S1_x_at--273--3991NONE
CGGGCGATCGTGATGGAGCTGTACT
NONE
Target Sequence 
AGAAAAAATATTCCCCATCTGTGAAATTCGCAAAACCCTAGCGCGGCGCGATGTCGAACACGAGGGTGTTCTTCGACATG
ACCGTCGGCGGAGTCCGGCGGGCGATCGTGATGGAGCTGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57490.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis