Browse Element(s) Details


Os.8939.1.S1_s_at

Description gb:AK105698.1
DB_XREF= gi:32990907
TID=Os.8939.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8939 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-D03, full insert sequence.
FL= gb:AK105698.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0292011/11HVA22-like protein i, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02880Os.11422.1.S1_at11/112+1106261..1111999expressed protein
LOC_Os02g02890Os.4157.1.S1_s_at11/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.4157.1.S1_at11/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.57490.1.S1_x_at10/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.25594.1.S1_at1/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02900OsAffx.11869.1.S1_at11/112+1123522..1125414expressed protein
LOC_Os02g02910Os.52234.1.S1_at11/112+1126060..1132613expressed protein
LOC_Os02g02910Os.6440.1.S1_at1/112+1126060..1132613expressed protein
LOC_Os02g02920Os.8939.1.S1_s_at11/112+1134727..1139272HVA22-like protein i, putative, expressed
LOC_Os02g02930Os.57103.1.S1_at11/112+1145837..1151141Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g02940Os.5096.1.S1_at9/112+1151848..1154292succinate dehydrogenase subunit 3, putative, expressed
LOC_Os02g02940OsAffx.16354.1.S1_x_at1/112+1151848..1154292succinate dehydrogenase subunit 3, putative, expressed
LOC_Os02g02950Os.56181.1.S1_at11/112+1154674..1156855pentatricopeptide, putative, expressed
LOC_Os02g02960Os.11527.1.S1_at11/112+1158885..1161235histone deacetylase complex subunit SAP18, putative, expressed
LOC_Os02g02970OsAffx.24074.1.S1_at11/112+1162143..1165062PAP/25A associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8939.1.S1_s_at--266--2691Chr02:1138683..1138707 (25 bp)
AAGCTCAAGCTGACAAGGCCCCAAT
LOC_Os02g02920
Os.8939.1.S1_s_at--1054--2711Chr02:1138767..1138791 (25 bp)
AAGCAGGCGCTGAAGCCGTCACAAC
LOC_Os02g02920
Os.8939.1.S1_s_at--580--1651Chr02:1138855..1138879 (25 bp)
AGCGCCGGTAATACCCGACGAGGAG
LOC_Os02g02920
Os.8939.1.S1_s_at--140--8531Chr02:1138948..1138972 (25 bp)
TGGACCGCCGCCGATGTACGTAAAG
LOC_Os02g02920
Os.8939.1.S1_s_at--352--9591Chr02:1138989..1139013 (25 bp)
TCATTTCTCGTCATACGTTTCGCTC
LOC_Os02g02920
Os.8939.1.S1_s_at--408--10291Chr02:1139006..1139030 (25 bp)
TTTCGCTCTCGACGCAGGGTGCACA
LOC_Os02g02920
Os.8939.1.S1_s_at--746--7772Chr02:1139023..1139047 (25 bp)
GGTGCACACTGCACTGCATGCACAT
LOC_Os02g02920
Os.8939.1.S1_s_at--589--9011Chr02:1139041..1139065 (25 bp)
TGCACATCCTGAAATCTGAATCCTG
LOC_Os02g02920
Os.8939.1.S1_s_at--563--471Chr02:1139084..1139108 (25 bp)
ATCTGAAGCCTGTTGGTTTCGTTTC
LOC_Os02g02920
Os.8939.1.S1_s_at--37--9351Chr02:1139107..1139131 (25 bp)
TCGCGGTTTCGCAATTGTGTATAGA
LOC_Os02g02920
Os.8939.1.S1_s_at--639--10831Chr02:1139121..1139145 (25 bp)
TTGTGTATAGATCCCACCAGGTCAC
LOC_Os02g02920
Target Sequence 
AAGCTCAAGCTGACAAGGCCCCAATTCCGGTCGCCCCTCCAGGCGCCGCCGTGCCTCCTGCACAGCCACAGCCACAGCCA
CCTCAAGCAGGCGCTGAAGCCGTCACAACGGAGAGCACCGAGGCGACGCAGGCGGCCAATCCACCGGCGACGACGGCGAG
CAACCCGCATCAAGCGCCGGTAATACCCGACGAGGAGACGCTCATCCAGGAGGCGATCCGGATGACACGGAGCCGGCTCA
GGAGGCGCATGGGTGGAGCTTGAACTGGACCGCCGCCGATGTACGTAAAGCTCCCACGCCACGGGATCATTTCTCGTCAT
ACGTTTCGCTCTCGACGCAGGGTGCACACTGCACTGCATGCACATCCTGAAATCTGAATCCTGTGTAAAAAAAAAAAAAC
AATCTGAAGCCTGTTGGTTTCGTTTCGCGGTTTCGCAATTGTGTATAGATCCCACCAGGTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8939.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis