Browse Element(s) Details


Os.57103.1.S1_at

Description gb:AK110925.1
DB_XREF= gi:32996134
TID=Os.57103.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57103 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D07, full insert sequence.
FL= gb:AK110925.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0293011/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02900OsAffx.11869.1.S1_at11/112+1123522..1125414expressed protein
LOC_Os02g02910Os.52234.1.S1_at11/112+1126060..1132613expressed protein
LOC_Os02g02910Os.6440.1.S1_at1/112+1126060..1132613expressed protein
LOC_Os02g02920Os.8939.1.S1_s_at11/112+1134727..1139272HVA22-like protein i, putative, expressed
LOC_Os02g02930Os.57103.1.S1_at11/112+1145837..1151141Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g02940Os.5096.1.S1_at9/112+1151848..1154292succinate dehydrogenase subunit 3, putative, expressed
LOC_Os02g02940OsAffx.16354.1.S1_x_at1/112+1151848..1154292succinate dehydrogenase subunit 3, putative, expressed
LOC_Os02g02950Os.56181.1.S1_at11/112+1154674..1156855pentatricopeptide, putative, expressed
LOC_Os02g02960Os.11527.1.S1_at11/112+1158885..1161235histone deacetylase complex subunit SAP18, putative, expressed
LOC_Os02g02970OsAffx.24074.1.S1_at11/112+1162143..1165062PAP/25A associated domain containing protein, expressed
LOC_Os02g02980OsAffx.2490.1.S1_at11/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02980Os.51951.1.S1_at1/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02990Os.16237.1.S1_at11/112+1173896..1177017expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57103.1.S1_at--560--8531Chr02:1150575..1150599 (25 bp)
TGGACGGATCGTACAAGGAGCTATA
LOC_Os02g02930
Os.57103.1.S1_at--1103--9691Chr02:1150680..1150704 (25 bp)
TCAACCGGGAGTGCTTCTCCGCTAG
LOC_Os02g02930
Os.57103.1.S1_at--1071--811Chr02:1150775..1150799 (25 bp)
ATGGTCGGCGTCATGTATGGCTACG
LOC_Os02g02930
Os.57103.1.S1_at--358--5791Chr02:1150826..1150850 (25 bp)
GACGACTACGTCAGGATGCTGCTCT
LOC_Os02g02930
Os.57103.1.S1_at--1142--611Chr02:1150841..1150865 (25 bp)
ATGCTGCTCTTCTGAATTCGATCGA
LOC_Os02g02930
Os.57103.1.S1_at--1001--91Chr02:1150856..1150880 (25 bp)
ATTCGATCGATTGATTCGACCTGAA
LOC_Os02g02930
Os.57103.1.S1_at--724--5831Chr02:1150873..1150897 (25 bp)
GACCTGAATTTTAATTTCATCCATG
LOC_Os02g02930
Os.57103.1.S1_at--525--9611Chr02:1150889..1150913 (25 bp)
TCATCCATGTATGAACCTCATCATC
LOC_Os02g02930
Os.57103.1.S1_at--38--431Chr02:1150908..1150932 (25 bp)
ATCATCGTCCATGCATAATGGCGTG
LOC_Os02g02930
Os.57103.1.S1_at--1013--8871Chr02:1150985..1151009 (25 bp)
TGAGGGAGATAGTACTGGTCGATTT
LOC_Os02g02930
Os.57103.1.S1_at--625--4991Chr02:1151117..1151141 (25 bp)
GCATGTAATTTATTGCCAAAGTTTC
LOC_Os02g02930
Target Sequence 
TGGACGGATCGTACAAGGAGCTATACCTCAAGGAGAACCCGGGGCTCGCCGCTGGCGAGGCGGAGGAGCACGTGCGGCGG
CTGATCGCGGGCGAGTGGGAGGAGCTCAACCGGGAGTGCTTCTCCGCTAGCCCCAGTAGATCGTCGCCGGCGACGACCTT
CCCCGCCGGCTTCACGCAGGCGGCGCTCAACGCCGCCAGGATGGTCGGCGTCATGTATGGCTACGACGGCGAGCGGCGGC
TCCCCGTCCTCGACGACTACGTCAGGATGCTGCTCTTCTGAATTCGATCGATTGATTCGACCTGAATTTTAATTTCATCC
ATGTATGAACCTCATCATCGTCCATGCATAATGGCGTGTAGAGATTAATTGTGGATTAGGTCTTTGTAAATAGGATTATA
GTTAGTTGAGTGAGGGAGATAGTACTGGTCGATTTTGTAGTAAATAAATATGATGAATTTTTACTCCCTCCATTATACAT
ATTATAAGGTGTTTTAGTTTTTTTTTCCTATGATAAACTAATTTCAAATTGAATGAATTTGGGCATGTAATTTATTGCCA
AAGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57103.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis