Browse Element(s) Details


OsAffx.2490.1.S1_at

Description tigr:9630.m00214
TID=OsAffx.2490.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0298011/11Enhanced disease susceptibility 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02930Os.57103.1.S1_at11/112+1145837..1151141Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g02940Os.5096.1.S1_at9/112+1151848..1154292succinate dehydrogenase subunit 3, putative, expressed
LOC_Os02g02940OsAffx.16354.1.S1_x_at1/112+1151848..1154292succinate dehydrogenase subunit 3, putative, expressed
LOC_Os02g02950Os.56181.1.S1_at11/112+1154674..1156855pentatricopeptide, putative, expressed
LOC_Os02g02960Os.11527.1.S1_at11/112+1158885..1161235histone deacetylase complex subunit SAP18, putative, expressed
LOC_Os02g02970OsAffx.24074.1.S1_at11/112+1162143..1165062PAP/25A associated domain containing protein, expressed
LOC_Os02g02980OsAffx.2490.1.S1_at11/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02980Os.51951.1.S1_at1/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02990Os.16237.1.S1_at11/112+1173896..1177017expressed protein
LOC_Os02g03000OsAffx.24075.1.S1_at11/112+1178870..1181645division protein, putative, expressed
LOC_Os02g03010OsAffx.24076.1.S1_at11/112+1185112..1186338expressed protein
LOC_Os02g03010OsAffx.24076.1.S1_s_at11/112+1185112..1186338expressed protein
LOC_Os02g03020OsAffx.11871.1.S1_s_at11/112+1187234..1187897calcium-binding protein, putative, expressed
LOC_Os02g03030OsAffx.24077.1.S1_at10/112+1190846..1192461PHD finger family protein, putative
LOC_Os02g03040Os.14104.1.A1_a_at11/112+1193388..1197056Arginine/serine-rich splicing factor RSP41, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006879biological_processiron ion homeostasis
GO:0006952biological_processdefense response
GO:0009697biological_processsalicylic acid biosynthesis
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
GO:0015559molecular_functionmultidrug efflux pump activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2490.1.S1_at--540--10691Chr02:1169473..1169600 (25 bp)
TTGCAGCCCACCAGGTTATGGTTAA
LOC_Os02g02980
OsAffx.2490.1.S1_at--11--7891Chr02:1169454..1169478 (25 bp)
GGTTAATGTCCTATGCATGTGCACT
LOC_Os02g02980
OsAffx.2490.1.S1_at--704--2551Chr02:1169406..1169430 (25 bp)
AACTGCACAGTCATTCATGCCAGAG
LOC_Os02g02980
OsAffx.2490.1.S1_at--169--10091Chr02:1168460..1168484 (25 bp)
TAGGAACACTTGTTCCGTGGCTTTT
LOC_Os02g02980
OsAffx.2490.1.S1_at--323--7531Chr02:1168444..1168468 (25 bp)
GTGGCTTTTTCCTAGTCTCTTTACT
LOC_Os02g02980
OsAffx.2490.1.S1_at--254--7771Chr02:1167749..1167773 (25 bp)
GGTGACACCTTCAGTGCATAGTCTT
LOC_Os02g02980
OsAffx.2490.1.S1_at--617--4871Chr02:1167380..1167404 (25 bp)
GCTTTGGCATTGGAACCTTTCTACT
LOC_Os02g02980
OsAffx.2490.1.S1_at--673--2251Chr02:1167007..1167031 (25 bp)
AAATTTGGTAGTTTGCCTGGATGCT
LOC_Os02g02980
OsAffx.2490.1.S1_at--189--4731Chr02:1166985..1167009 (25 bp)
GCTGGTGGATACTTGTCTTGTTTCA
LOC_Os02g02980
OsAffx.2490.1.S1_at--164--2871Chr02:1166755..1166779 (25 bp)
AAGTGCTTTACAACGGCTTCTTTCT
LOC_Os02g02980
OsAffx.2490.1.S1_at--621--3651Chr02:1166739..1166763 (25 bp)
CTTCTTTCTCCAACGGGCATGCTAT
LOC_Os02g02980
Target Sequence 
TTGCAGCCCACCAGGTTATGGTTAATGTCCTATGCATGTGCACTGTTTGGGGTGAGCCCCTGTCACAAACTGCACAGTCA
TTCATGCCAGAGTTGATATATGGAGCTAAGTGCAATTTGATGAAGGCAAGGATGCTATTGAAATCACTTGTCATGATTGG
AGCAATAACTGGAACGACTGTGGGGGCAGTAGGAACACTTGTTCCGTGGCTTTTTCCTAGTCTCTTTACTAATGATTTTA
TGGTTGTCCAACAGATGCATAAAGTGCTGATTCCATATTTCTGTGCATTATTGGTGACACCTTCAGTGCATAGTCTTGAA
GGAACATTATTGGCTGGAAGAGATCTCAGGTTTTTGAGTCAATCAATGGGAGCATGCTTTGGCATTGGAACCTTTCTACT
AATGATCATTCGCAACAAATTTGGTAGTTTGCCTGGATGCTGGTGGATACTTGTCTTGTTTCAGTGGGGTCGGTTTGGAA
GTGCTTTACAACGGCTTCTTTCTCCAACGGGCATGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis