Browse Element(s) Details


Os.14104.1.A1_a_at

Description gb:AK121372.1
DB_XREF= gi:37990995
TID=Os.14104.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.14104 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023126J16, full insert sequence.
FL= gb:AK121372.1 gb:AK062255.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0304011/11Arginine/serine-rich splicing factor RSP41, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02980OsAffx.2490.1.S1_at11/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02980Os.51951.1.S1_at1/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02990Os.16237.1.S1_at11/112+1173896..1177017expressed protein
LOC_Os02g03000OsAffx.24075.1.S1_at11/112+1178870..1181645division protein, putative, expressed
LOC_Os02g03010OsAffx.24076.1.S1_at11/112+1185112..1186338expressed protein
LOC_Os02g03010OsAffx.24076.1.S1_s_at11/112+1185112..1186338expressed protein
LOC_Os02g03020OsAffx.11871.1.S1_s_at11/112+1187234..1187897calcium-binding protein, putative, expressed
LOC_Os02g03030OsAffx.24077.1.S1_at10/112+1190846..1192461PHD finger family protein, putative
LOC_Os02g03040Os.14104.1.A1_a_at11/112+1193388..1197056Arginine/serine-rich splicing factor RSP41, putative, expressed
LOC_Os02g03050OsAffx.24078.1.S1_at11/112+1198657..1202304ribosomal RNA adenine dimethylase family protein, expressed
LOC_Os02g03050Os.49378.1.S1_at11/112+1198657..1202304ribosomal RNA adenine dimethylase family protein, expressed
LOC_Os02g03060Os.51694.1.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.2.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.1.S1_x_at10/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03070Os.10080.1.S1_at10/112+1213995..1218034shrunken seed protein, putative, expressed
LOC_Os02g03070OsAffx.30891.1.S1_at1/112+1213995..1218034shrunken seed protein, putative, expressed
LOC_Os02g03080Os.48733.1.A1_at9/112+1219306..1222866Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g03080Os.48081.1.S1_at1/112+1219306..1222866Eukaryotic translation initiation factor 3 subunit 8, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0005681cellular_componentspliceosome complex
GO:0016607cellular_componentnuclear speck
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14104.1.A1_a_at--629--7551Chr02:1194030..1194054 (25 bp)
GGGCGGTCTGCAAGTCCTTATGGCA
LOC_Os02g03040
Os.14104.1.A1_a_at--367--1331Chr02:1193928..1193952 (25 bp)
AGAGGTAGCCCTGATTATCACCGTG
LOC_Os02g03040
Os.14104.1.A1_a_at--891--10151Chr02:1193913..1193937 (25 bp)
TATCACCGTGGTGCAAGTCCGCAAG
LOC_Os02g03040
Os.14104.1.A1_a_at--96--2531Chr02:1193850..1193874 (25 bp)
AACTACGACCGTGAACGCCGTGAAG
LOC_Os02g03040
Os.14104.1.A1_a_at--303--5351Chr02:1193673..1193697 (25 bp)
GAAGTTGCTCCACATGATGCCTGCG
LOC_Os02g03040
Os.14104.1.A1_a_at--153--4911Chr02:1193636..1193660 (25 bp)
GCTTCAGATCAATGGACGCACTATT
LOC_Os02g03040
Os.14104.1.A1_a_at--870--2551Chr02:1193600..1193624 (25 bp)
AACTGCTGATGTTGTCTCTCTGAAA
LOC_Os02g03040
Os.14104.1.A1_a_at--241--5771Chr02:1193553..1193577 (25 bp)
GACGATTCGTGTACTAGCTAGCTCT
LOC_Os02g03040
Os.14104.1.A1_a_at--121--6811Chr02:1193520..1193544 (25 bp)
GTTTTGTGGATCTCAACTCGTGTTG
LOC_Os02g03040
Os.14104.1.A1_a_at--568--8811Chr02:1193500..1193524 (25 bp)
TGTTGTTAGCTTACACCTCTTTTCC
LOC_Os02g03040
Os.14104.1.A1_a_at--848--4291Chr02:1193485..1193509 (25 bp)
CCTCTTTTCCCGCTTTGATATGAGA
LOC_Os02g03040
Target Sequence 
GGGCGGTCTGCAAGTCCTTATGGCAGAGGGCGTGAGAGGGGCAGCCCTGACTATGGAAGAGGCAGGGAGAGGGGCAGCCC
GGACTATGGCAGGGGTGGTGACAGAGGTAGCCCTGATTATCACCGTGGTGCAAGTCCGCAAGGGGGCAACAAAGGTGATG
AGAGGGGCAGCCCCCCTAACAACTACGACCGTGAACGCCGTGAAGCCAGCCCTGGCTATGATAGGCCCCGCAGTCGCTCA
CCTGCGAGGTACGAGAGAGAATGAAGTTGCTCCACATGATGCCTGCGCTGCACCTTCCTGCTTCAGATCAATGGACGCAC
TATTATTATGTACTGAACTGCTGATGTTGTCTCTCTGAAAGTTGTATTAGTAATTGGTAGCAGACGATTCGTGTACTAGC
TAGCTCTAGAACAATGTTTTGTGGATCTCAACTCGTGTTGTTAGCTTACACCTCTTTTCCCGCTTTGATATGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14104.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis