Browse Element(s) Details


Os.51951.1.S1_at

Description gb:AK064391.1
DB_XREF= gi:32974409
TID=Os.51951.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51951 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-F10, full insert sequence.
FL= gb:AK064391.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1033011/11F-box domain containing protein, expressed
LOC_Os02g029801/11Enhanced disease susceptibility 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10290Os.2436.1.S1_at10/1111+5581963..5584666D-mannose binding lectin family protein, expressed
LOC_Os11g10300OsAffx.31999.3.S1_at11/1111+5586100..5587921F-box domain containing protein
LOC_Os11g10300Os.54112.1.S1_at1/1111+5586100..5587921F-box domain containing protein
LOC_Os11g10310Os.49827.1.S1_at11/1111+5588030..5598545Leucine Rich Repeat family protein, expressed
LOC_Os11g10320OsAffx.7060.1.S1_s_at10/1111+5600720..5602730expressed protein
LOC_Os11g10320Os.7980.1.S1_at3/1111+5600720..5602730expressed protein
LOC_Os11g10330Os.51951.1.S1_at11/1111+5606764..5610537F-box domain containing protein, expressed
LOC_Os11g10340Os.2431.1.S1_at11/1111+5610910..5613865F-box domain containing protein, expressed
LOC_Os11g10350NANA11+5614657..5615475retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10360NANA11+5616833..5618131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10370OsAffx.7062.1.S1_at11/1111+5623357..5624506F-box domain containing protein
LOC_Os11g10384OsAffx.7063.1.S1_at11/1111+5627299..5635856transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006879biological_processiron ion homeostasis
GO:0006952biological_processdefense response
GO:0009697biological_processsalicylic acid biosynthesis
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
GO:0015559molecular_functionmultidrug efflux pump activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51951.1.S1_at--757--151Chr11:5607072..5607092 (21 bp)
ATTTGTTTCAGTTTCGAGTAGGCTT
LOC_Os11g10330
Os.51951.1.S1_at--1085--1231Chr11:5607043..5607067 (25 bp)
AGTTGGGCTGTTCCATGGATCTACT
LOC_Os11g10330
Os.51951.1.S1_at--381--7971Chr11:5607027..5607051 (25 bp)
GGATCTACTACTATGTTACTGTTCA
LOC_Os11g10330
Os.51951.1.S1_at--100--10471Chr11:5607012..5607036 (25 bp)
TTACTGTTCAGAGCATTGGTGGCTT
LOC_Os11g10330
Os.51951.1.S1_at--668--32Chr11:5606998..5607022 (25 bp)
ATTGGTGGCTTGGTGCTTAATTTGC
LOC_Os11g10330
Os.51951.1.S1_at--29--10711Chr11:5606956..5606980 (25 bp)
TTGCGGTATTATGTCTGTTGGTATC
LOC_Os11g10330
Os.51951.1.S1_at--567--2631Chr11:5606887..5606911 (25 bp)
AACCTTGTCTGTATTTGTAACTGCC
LOC_Os11g10330
Os.51951.1.S1_at--234--8751Chr11:5606872..5606896 (25 bp)
TGTAACTGCCTTACTATGGCCTAGG
LOC_Os11g10330
Os.51951.1.S1_at--758--4911Chr11:5606833..5606857 (25 bp)
GCTTGTAATCTAGTTGGACGGACCT
LOC_Os11g10330
Os.51951.1.S1_at--381--8111Chr11:5606818..5606842 (25 bp)
GGACGGACCTAGTATACTGTGATTT
LOC_Os11g10330
Os.51951.1.S1_at--889--1951Chr11:5606803..5606827 (25 bp)
ACTGTGATTTGCTATTTCTTTTGAA
LOC_Os11g10330
Target Sequence 
ATTTGTTTCAGTTTCGAGTAGGCTTTAAAAGTTGGGCTGTTCCATGGATCTACTACTATGTTACTGTTCAGAGCATTGGT
GGCTTGGTGCTTAATTTGCTGTGACAATTGAGAAGGTTGCGGTATTATGTCTGTTGGTATCATATTGATGTTCTAGTCAT
AGTAACTGTTTAAAACTGACAAAATAACCTTGTCTGTATTTGTAACTGCCTTACTATGGCCTAGGGAGAGTTTAGAAGTG
CTTGTAATCTAGTTGGACGGACCTAGTATACTGTGATTTGCTATTTCTTTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis