Browse Element(s) Details


Os.7980.1.S1_at

Description gb:AU057026
DB_XREF= gi:4715910
DB_XREF=AU057026
CLONE=S21074_2Z
TID=Os.7980.1
CNT=10
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7980 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_179188.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g103203/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10280Os.2436.1.S1_at4/1111+5575562..5578033D-mannose binding lectin family protein
LOC_Os11g10290Os.2436.1.S1_at10/1111+5581963..5584666D-mannose binding lectin family protein, expressed
LOC_Os11g10300OsAffx.31999.3.S1_at11/1111+5586100..5587921F-box domain containing protein
LOC_Os11g10300Os.54112.1.S1_at1/1111+5586100..5587921F-box domain containing protein
LOC_Os11g10310Os.49827.1.S1_at11/1111+5588030..5598545Leucine Rich Repeat family protein, expressed
LOC_Os11g10320OsAffx.7060.1.S1_s_at10/1111+5600720..5602730expressed protein
LOC_Os11g10320Os.7980.1.S1_at3/1111+5600720..5602730expressed protein
LOC_Os11g10330Os.51951.1.S1_at11/1111+5606764..5610537F-box domain containing protein, expressed
LOC_Os11g10340Os.2431.1.S1_at11/1111+5610910..5613865F-box domain containing protein, expressed
LOC_Os11g10350NANA11+5614657..5615475retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10360NANA11+5616833..5618131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10370OsAffx.7062.1.S1_at11/1111+5623357..5624506F-box domain containing protein
LOC_Os11g10384OsAffx.7063.1.S1_at11/1111+5627299..5635856transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7980.1.S1_at--450--8371Chr11:5602581..5602605 (25 bp)
GGCGAACCTATCTATCTATGTGTAT
LOC_Os11g10320
Os.7980.1.S1_at--707--8671Chr11:5602599..5602623 (25 bp)
TGTGTATCGATCTAGCTACCGAATT
LOC_Os11g10320
Os.7980.1.S1_at--193--4851Chr11:5602613..5602637 (25 bp)
GCTACCGAATTTGACATCGTTCGTC
LOC_Os11g10320
Os.7980.1.S1_at--665--891NONE
AGGCCGACAAGAATGGCTCTCCCAA
NONE
Os.7980.1.S1_at--974--3271NONE
CAAAATTTGCCACCCGATTGCGACG
NONE
Os.7980.1.S1_at--995--7691NONE
GGGTAATATTGCAATCCGCCTTCTA
NONE
Os.7980.1.S1_at--1111--591NONE
ATGCCGATGGCACCCTAGGAAATGT
NONE
Os.7980.1.S1_at--999--751NONE
ATGTCGTGAGAGGAGACCCACCGAT
NONE
Os.7980.1.S1_at--784--5991NONE
GAGACCCACCGATAGAAAACACGAG
NONE
Os.7980.1.S1_at--775--7031NONE
GTAACAGGCGGGAGGCCAATCACAG
NONE
Os.7980.1.S1_at--570--9831NONE
TAAACAACTCATGGTGCTGCACGTC
NONE
Target Sequence 
GGCGAACCTATCTATCTATGTGTATCGATCTAGCTACCGAATTTGACATCGTTCGTCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCCGACAAGAATGGCTCTCCCAAAATTTGCCACC
CGATTGCGACGGGAATTGGAGGCGTAAATTGGTGAAATCGGGTAATATTGCAATCCGCCTTCTACCAATGCCGATGGCAC
CCTAGGAAATGTCGTGAGAGGAGACCCACCGATAGAAAACACGAGAATCAACAGGTAACAGGCGGGAGGCCAATCACAGG
GGGANATAAACAACTCATGGTGCTGCACGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis