Browse Element(s) Details


Os.49827.1.S1_at

Description gb:AK111797.1
DB_XREF= gi:37988460
TID=Os.49827.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49827 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151E16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023102H15, full insert sequence.
FL= gb:AK111797.1 gb:AK100040.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1031011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10250Os.54679.1.S1_at11/1111+5558304..5563759expressed protein
LOC_Os11g10250OsAffx.18779.1.S1_at10/1111+5558304..5563759expressed protein
LOC_Os11g10250Os.52549.1.S1_s_at1/1111+5558304..5563759expressed protein
LOC_Os11g10260NANA11+5564981..5572514retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10270NANA11+5573437..5574183retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10280Os.2436.1.S1_at4/1111+5575562..5578033D-mannose binding lectin family protein
LOC_Os11g10290Os.2436.1.S1_at10/1111+5581963..5584666D-mannose binding lectin family protein, expressed
LOC_Os11g10300OsAffx.31999.3.S1_at11/1111+5586100..5587921F-box domain containing protein
LOC_Os11g10300Os.54112.1.S1_at1/1111+5586100..5587921F-box domain containing protein
LOC_Os11g10310Os.49827.1.S1_at11/1111+5588030..5598545Leucine Rich Repeat family protein, expressed
LOC_Os11g10320OsAffx.7060.1.S1_s_at10/1111+5600720..5602730expressed protein
LOC_Os11g10320Os.7980.1.S1_at3/1111+5600720..5602730expressed protein
LOC_Os11g10330Os.51951.1.S1_at11/1111+5606764..5610537F-box domain containing protein, expressed
LOC_Os11g10340Os.2431.1.S1_at11/1111+5610910..5613865F-box domain containing protein, expressed
LOC_Os11g10350NANA11+5614657..5615475retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10360NANA11+5616833..5618131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10370OsAffx.7062.1.S1_at11/1111+5623357..5624506F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49827.1.S1_at--1007--10771Chr11:5588575..5588599 (25 bp)
TTGTACACTGCAAACGTCATCAACG
LOC_Os11g10310
Os.49827.1.S1_at--621--2551Chr11:5588554..5588578 (25 bp)
AACGTCACTATATTATCCACCACTT
LOC_Os11g10310
Os.49827.1.S1_at--650--1711Chr11:5588536..5588560 (25 bp)
ACCACTTCTTGTCTTCGTTGCCAAG
LOC_Os11g10310
Os.49827.1.S1_at--815--3191Chr11:5588515..5588539 (25 bp)
CAAGGATGGCCTTCTCAACTTCTGC
LOC_Os11g10310
Os.49827.1.S1_at--912--3691Chr11:5588477..5588501 (25 bp)
CTATGCCCGGAGTAGCCCGAGATAA
LOC_Os11g10310
Os.49827.1.S1_at--257--9811Chr11:5588455..5588479 (25 bp)
TAACAAGGAGGGTTGCGCCATCAAG
LOC_Os11g10310
Os.49827.1.S1_at--929--3871Chr11:5588410..5588434 (25 bp)
CTGTTTCCGCCTTCAAGAATGACTT
LOC_Os11g10310
Os.49827.1.S1_at--218--5271Chr11:5588394..5588418 (25 bp)
GAATGACTTTCTCGACTTTTGCCAA
LOC_Os11g10310
Os.49827.1.S1_at--558--71Chr11:5588366..5588390 (25 bp)
ATTCCTCGTCGGAGCATCCGTTAAA
LOC_Os11g10310
Os.49827.1.S1_at--131--951Chr11:5588255..5588279 (25 bp)
AGGACGGACGAACTCGTTGTCCATC
LOC_Os11g10310
Os.49827.1.S1_at--1031--8551Chr11:5588055..5588079 (25 bp)
TGGATGTCAACATTGCTCTGCATAT
LOC_Os11g10310
Target Sequence 
TTGTACACTGCAAACGTCATCAACGTCACTATATTATCCACCACTTCTTGTCTTCGTTGCCAAGGATGGCCTTCTCAACT
TCTGCTCGCCCACCCATCCTATGCCCGGAGTAGCCCGAGATAACAAGGAGGGTTGCGCCATCAAGGTCGAGCTGACCCCT
GCTTCCTGTTTCCGCCTTCAAGAATGACTTTCTCGACTTTTGCCAACCCATTCCTCGTCGGAGCATCCGTTAAAAAGGAT
GGCCAACAAGATGTGGAGGCAATCCTCGCCTCTTTGATGGCCAGGAAGATAAGAAGAAGACCCCCTCAATAGCGGTGTGG
AGGACGGACGAACTCGTTGTCCATCCCACAGGCGTTGGCATGTGGTGGACGGAGAAACTCGCCGGCGTGTCGAGGGTGGA
GAGTTGACATTGAACGACAAAAAGTGGCATGGGAAAAAAGGAATTCACACTCCTAGTGGCATAATATAAAAGTGCTACGA
ATTGAGTGGCATATCCTGAGAGTGCTCTGAATTGGATATTTGGATGTCAACATTGCTCTGCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49827.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis