Browse Element(s) Details


Os.48733.1.A1_at

Description gb:CR288006
DB_XREF= gi:44674572
DB_XREF=CR288006
CLONE=y699b02p3
TID=Os.48733.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.48733 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T47732 (A.thaliana) T47732 probable translation initiation factor eIF-3 chain 8 F18O21.110 (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g030809/11Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03040Os.14104.1.A1_a_at11/112+1193388..1197056Arginine/serine-rich splicing factor RSP41, putative, expressed
LOC_Os02g03050OsAffx.24078.1.S1_at11/112+1198657..1202304ribosomal RNA adenine dimethylase family protein, expressed
LOC_Os02g03050Os.49378.1.S1_at11/112+1198657..1202304ribosomal RNA adenine dimethylase family protein, expressed
LOC_Os02g03060Os.51694.1.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.2.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.1.S1_x_at10/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03070Os.10080.1.S1_at10/112+1213995..1218034shrunken seed protein, putative, expressed
LOC_Os02g03070OsAffx.30891.1.S1_at1/112+1213995..1218034shrunken seed protein, putative, expressed
LOC_Os02g03080Os.48733.1.A1_at9/112+1219306..1222866Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g03080Os.48081.1.S1_at1/112+1219306..1222866Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g03090OsAffx.24079.1.S1_at11/112+1223725..1226826expressed protein
LOC_Os02g03100Os.5272.1.S1_at11/112+1227321..1230217NADP-dependent D-sorbitol-6-phosphate dehydrogenase, putative, expressed
LOC_Os02g03110Os.18465.1.S1_at11/112+1231029..1234484CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os02g03110Os.18465.2.S1_x_at9/112+1231029..1234484CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os02g03120Os.54770.1.S1_at10/112+1237099..1240160Endoglucanase 1 precursor, putative, expressed
LOC_Os02g03130NANA2+1245577..1247286hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0009409biological_processresponse to cold
GO:0005852cellular_componenteukaryotic translation initiation factor 3 complex
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48733.1.A1_at--186--8631Chr02:1222617..1222641 (25 bp)
TGGTGGTTCACGCTTCCAGGATGGT
LOC_Os02g03080
Os.48733.1.A1_at--915--6771Chr02:1222724..1222748 (25 bp)
GTTAGAGAACTAGTTCTCCAGGATA
LOC_Os02g03080
Os.48733.1.A1_at--947--10392Chr02:1222764..1222788 (25 bp)
TTTTGCAAGTTCTGAAGCACCAATC
LOC_Os02g03080
Os.48733.1.A1_at--1--8991Chr02:1222776..1222800 (25 bp)
TGAAGCACCAATCAAGTTTCTGGCA
LOC_Os02g03080
Os.48733.1.A1_at--540--3591Chr02:1222799..1222823 (25 bp)
CATTTTGGAAGTCGCATCTGTTCTA
LOC_Os02g03080
Os.48733.1.A1_at--587--8171Chr02:1222805..1222829 (25 bp)
GGAAGTCGCATCTGTTCTAAACCTG
LOC_Os02g03080
Os.48733.1.A1_at--790--4971Chr02:1222812..1222836 (25 bp)
GCATCTGTTCTAAACCTGGTCTTGT
LOC_Os02g03080
Os.48733.1.A1_at--427--3891Chr02:1222827..1222851 (25 bp)
CTGGTCTTGTTTCTTAATTTCGTTG
LOC_Os02g03080
Os.48733.1.A1_at--589--8771Chr02:1222834..1222858 (25 bp)
TGTTTCTTAATTTCGTTGCAGCTTA
LOC_Os02g03080
Os.48733.1.A1_at--480--1791Chr02:1222868..1222892 (25 bp)
ACATTAAATTTGTCGAACACTTGGA
NONE
Os.48733.1.A1_at--217--8711Chr02:1222878..1222902 (25 bp)
TGTCGAACACTTGGACAAAGAGCTC
NONE
Target Sequence 
TGGTGGTTCACGCTTCCAGGATGGTGGAAGATCTCNCACTGGTTCGATGGCGAAGGGAGGAGGTGATGGCGGTGCACGCA
TGGTGAGCCTGAACAGGGCTGGTAGAGGTTAGAGAACTAGTTCTCCAGGATAGTATTCAGCGCAAAGTTTTGCAAGTTCT
GAAGCACCAATCAAGTTTCTGGCATTTTGGAAGTCGCATCTGTTCTAAACCTGGTCTTGTTTCTTAATTTCGTTGCAGCT
TACAGTTTAAAACATTAAATTTGTCGAACACTTGGACAAAGAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48733.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis