Browse Element(s) Details


Os.54770.1.S1_at

Description gb:AK106726.1
DB_XREF= gi:32991935
TID=Os.54770.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54770 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H03, full insert sequence.
FL= gb:AK106726.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0312010/11Endoglucanase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03070Os.10080.1.S1_at10/112+1213995..1218034shrunken seed protein, putative, expressed
LOC_Os02g03070OsAffx.30891.1.S1_at1/112+1213995..1218034shrunken seed protein, putative, expressed
LOC_Os02g03080Os.48733.1.A1_at9/112+1219306..1222866Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g03080Os.48081.1.S1_at1/112+1219306..1222866Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g03090OsAffx.24079.1.S1_at11/112+1223725..1226826expressed protein
LOC_Os02g03100Os.5272.1.S1_at11/112+1227321..1230217NADP-dependent D-sorbitol-6-phosphate dehydrogenase, putative, expressed
LOC_Os02g03110Os.18465.1.S1_at11/112+1231029..1234484CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os02g03110Os.18465.2.S1_x_at9/112+1231029..1234484CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os02g03120Os.54770.1.S1_at10/112+1237099..1240160Endoglucanase 1 precursor, putative, expressed
LOC_Os02g03130NANA2+1245577..1247286hypothetical protein
LOC_Os02g03140NANA2+1249053..1249268inhibitor I family protein
LOC_Os02g03150NANA2+1250017..1250226inhibitor I family protein
LOC_Os02g03160OsAffx.19542.3.S1_x_at10/112+1252853..1257075retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g03170NANA2+1258361..1258591inhibitor I family protein
LOC_Os02g03180NANA2+1259983..1260234inhibitor I family protein
LOC_Os02g03190NANA2+1262119..1262364inhibitor I family protein
LOC_Os02g03200Os.18338.1.S1_at11/112+1263503..1266099FAD-binding domain-containing protein, putative, expressed
LOC_Os02g03200OsAffx.16839.1.S1_at1/112+1263503..1266099FAD-binding domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0042547biological_processcell wall modification during multidimensional cell growth
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54770.1.S1_at--945--451NONE
ATCTCCCTCGCCAAGAAACAGGTGG
NONE
Os.54770.1.S1_at--974--4152Chr05:4816664..4816982 (25 bp)
CGCCGGAGCCGGACAGGAACCTGCT
NONE
Os.54770.1.S1_at--321--1651Chr02:1240023..1240047 (25 bp)
AGCGCACAAGATCTTCACGCCATGA
LOC_Os02g03120
Os.54770.1.S1_at--15--1291Chr02:1240031..1240055 (25 bp)
AGATCTTCACGCCATGATCGATGAA
LOC_Os02g03120
Os.54770.1.S1_at--176--10511Chr02:1240036..1240060 (25 bp)
TTCACGCCATGATCGATGAACTCGA
LOC_Os02g03120
Os.54770.1.S1_at--302--6311Chr02:1240050..1240074 (25 bp)
GATGAACTCGATCTAGCTTACGATT
LOC_Os02g03120
Os.54770.1.S1_at--415--2691Chr02:1240075..1240099 (25 bp)
AAGCTTAATTATGTACGCTACGAGA
LOC_Os02g03120
Os.54770.1.S1_at--397--8751Chr02:1240086..1240110 (25 bp)
TGTACGCTACGAGATGCATGTGAGT
LOC_Os02g03120
Os.54770.1.S1_at--1071--3711Chr02:1240092..1240116 (25 bp)
CTACGAGATGCATGTGAGTGACGAT
LOC_Os02g03120
Os.54770.1.S1_at--735--5771Chr02:1240111..1240135 (25 bp)
GACGATGGTGTCACTTCGATTAATT
LOC_Os02g03120
Os.54770.1.S1_at--1102--7731Chr02:1240117..1240141 (25 bp)
GGTGTCACTTCGATTAATTGATTAA
LOC_Os02g03120
Target Sequence 
ATCTCCCTCGCCAAGAAACAGGTGGACTACATACTCGGGGCGAATCCGGCGGGGATGTCGTACATGGTGGGGTTCGGGGC
GAGGTACCCGCGGCACGTGCACCACCGCGGCGCGTCCATGCCGTCGGTGCGCGACCACCCGGCGAGGATCGGCTGCGACG
AGGGGTTCCGCTACCTGCACTCGCCGGAGCCGGACAGGAACCTGCTCGCCGGCGCCGTCGTCGGCGGCCCCGACGCCGGC
GACGCCTTCGCCGACGGCCGCGACAACTACGCGCAGGCCGAGCCGTCCACCTACACCAACGCGCCGCTCGTCGGCGCGCT
CGCCTTCTTCGCCGGAGCGCACAAGATCTTCACGCCATGATCGATGAACTCGATCTAGCTTACGATTAAGCTTAATTATG
TACGCTACGAGATGCATGTGAGTGACGATGGTGTCACTTCGATTAATTGATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54770.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis