Browse Element(s) Details


OsAffx.16839.1.S1_at

Description tigr:9636.m00482
TID=OsAffx.16839.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sm protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g032001/11FAD-binding domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03120Os.54770.1.S1_at10/112+1237099..1240160Endoglucanase 1 precursor, putative, expressed
LOC_Os02g03130NANA2+1245577..1247286hypothetical protein
LOC_Os02g03140NANA2+1249053..1249268inhibitor I family protein
LOC_Os02g03150NANA2+1250017..1250226inhibitor I family protein
LOC_Os02g03160OsAffx.19542.3.S1_x_at10/112+1252853..1257075retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g03170NANA2+1258361..1258591inhibitor I family protein
LOC_Os02g03180NANA2+1259983..1260234inhibitor I family protein
LOC_Os02g03190NANA2+1262119..1262364inhibitor I family protein
LOC_Os02g03200Os.18338.1.S1_at11/112+1263503..1266099FAD-binding domain-containing protein, putative, expressed
LOC_Os02g03200OsAffx.16839.1.S1_at1/112+1263503..1266099FAD-binding domain-containing protein, putative, expressed
LOC_Os02g03210NANA2+1273228..1275549FAD-binding domain-containing protein, putative, expressed
LOC_Os02g03220Os.51980.1.S1_at11/112+1283155..1288182expressed protein
LOC_Os02g03220Os.49499.1.S1_at2/112+1283155..1288182expressed protein
LOC_Os02g03230Os.11750.1.A1_at11/112+1288992..1292410Nodule membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16839.1.S1_at--900--6291Chr08:2961072..2961578 (25 bp)
GATGATGAACACTTCTATTAGGGAC
NONE
OsAffx.16839.1.S1_at--954--6311Chr08:2961075..2961581 (25 bp)
GATGAACACTTCTATTAGGGACATG
NONE
OsAffx.16839.1.S1_at--346--5492Chr08:2961078..2961584 (25 bp)
GAACACTTCTATTAGGGACATGGCA
NONE
OsAffx.16839.1.S1_at--913--2051NONE
ACTTCTATTAGGGACATGGCATTAC
NONE
OsAffx.16839.1.S1_at--413--4951Chr08:2961582..2961606 (25 bp)
GCATTACTGCCATATTGCTTGAAAA
NONE
OsAffx.16839.1.S1_at--202--10471Chr08:2961585..2961609 (25 bp)
TTACTGCCATATTGCTTGAAAAGGA
NONE
OsAffx.16839.1.S1_at--1108--10711Chr08:2961596..2961620 (25 bp)
TTGCTTGAAAAGGAAATCTCATGGA
NONE
OsAffx.16839.1.S1_at--909--451Chr08:2961611..2961635 (25 bp)
ATCTCATGGAGATCTTGTTGATGTC
NONE
OsAffx.16839.1.S1_at--761--3751Chr08:2961613..2961637 (25 bp)
CTCATGGAGATCTTGTTGATGTCTT
NONE
OsAffx.16839.1.S1_at--1151--3491Chr08:2961615..2961639 (25 bp)
CATGGAGATCTTGTTGATGTCTTCT
NONE
OsAffx.16839.1.S1_at--605--8551Chr08:2961617..2961641 (25 bp)
TGGAGATCTTGTTGATGTCTTCTGT
NONE
Target Sequence 
GATGATGAACACTTCTATTAGGGACATGGCATTACTGCCATATTGCTTGAAAAGGAAATCTCATGGAGATCTTGTTGATG
TCTTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16839.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis