Browse Element(s) Details


Os.18338.1.S1_at

Description gb:AK108718.1
DB_XREF= gi:32993927
TID=Os.18338.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18338 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-B11, full insert sequence.
FL= gb:AK108718.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0320011/11FAD-binding domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03120Os.54770.1.S1_at10/112+1237099..1240160Endoglucanase 1 precursor, putative, expressed
LOC_Os02g03130NANA2+1245577..1247286hypothetical protein
LOC_Os02g03140NANA2+1249053..1249268inhibitor I family protein
LOC_Os02g03150NANA2+1250017..1250226inhibitor I family protein
LOC_Os02g03160OsAffx.19542.3.S1_x_at10/112+1252853..1257075retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g03170NANA2+1258361..1258591inhibitor I family protein
LOC_Os02g03180NANA2+1259983..1260234inhibitor I family protein
LOC_Os02g03190NANA2+1262119..1262364inhibitor I family protein
LOC_Os02g03200Os.18338.1.S1_at11/112+1263503..1266099FAD-binding domain-containing protein, putative, expressed
LOC_Os02g03200OsAffx.16839.1.S1_at1/112+1263503..1266099FAD-binding domain-containing protein, putative, expressed
LOC_Os02g03210NANA2+1273228..1275549FAD-binding domain-containing protein, putative, expressed
LOC_Os02g03220Os.51980.1.S1_at11/112+1283155..1288182expressed protein
LOC_Os02g03220Os.49499.1.S1_at2/112+1283155..1288182expressed protein
LOC_Os02g03230Os.11750.1.A1_at11/112+1288992..1292410Nodule membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18338.1.S1_at--729--3531Chr02:1263654..1263678 (25 bp)
CATCGCGCGCGGCAATACGAATATG
LOC_Os02g03200
Os.18338.1.S1_at--266--311Chr02:1263640..1263664 (25 bp)
ATACGAATATGGCTGTATTGGCCCA
LOC_Os02g03200
Os.18338.1.S1_at--782--4731Chr02:1263629..1263653 (25 bp)
GCTGTATTGGCCCATTGGATTTCAG
LOC_Os02g03200
Os.18338.1.S1_at--145--11Chr02:1263619..1263643 (25 bp)
CCCATTGGATTTCAGGCCCGTTTTG
LOC_Os02g03200
Os.18338.1.S1_at--160--6511Chr02:1263612..1263636 (25 bp)
GATTTCAGGCCCGTTTTGGGTCTAG
LOC_Os02g03200
Os.18338.1.S1_at--969--4531Chr02:1263604..1263628 (25 bp)
GCCCGTTTTGGGTCTAGTTCTTGTG
LOC_Os02g03200
Os.18338.1.S1_at--838--1211Chr02:1263589..1263613 (25 bp)
AGTTCTTGTGTAACGTGGCGTGGCC
LOC_Os02g03200
Os.18338.1.S1_at--168--8751Chr02:1263581..1263605 (25 bp)
TGTAACGTGGCGTGGCCCACTACAG
LOC_Os02g03200
Os.18338.1.S1_at--739--2171Chr02:1263559..1263583 (25 bp)
CAGCCCACCAAAATATGTACCCGAT
LOC_Os02g03200
Os.18338.1.S1_at--303--271Chr02:1263547..1263571 (25 bp)
ATATGTACCCGATTTTATCTCCCTT
LOC_Os02g03200
Os.18338.1.S1_at--418--8751Chr02:1263544..1263568 (25 bp)
TGTACCCGATTTTATCTCCCTTATT
LOC_Os02g03200
Target Sequence 
CATCGCGCGCGGCAATACGAATATGGCTGTATTGGCCCATTGGATTTCAGGCCCGTTTTGGGTCTAGTTCTTGTGTAACG
TGGCGTGGCCCACTACAGCCCACCAAAATATGTACCCGATTTTATCTCCCTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis