Browse Element(s) Details


OsAffx.30891.1.S1_at

Description tigr:9639.m00837
TID=OsAffx.30891.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0874011/11hypothetical protein
LOC_Os11g0888011/11hypothetical protein
LOC_Os02g030701/11shrunken seed protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08670Os.17282.1.S1_at10/1111+4621013..4627105ATP-NAD kinase family protein, expressed
LOC_Os11g08680Os.8169.1.S1_at3/1111+4629965..4630519hypothetical protein
LOC_Os11g08689OsAffx.30486.1.S1_at1/1111+4633832..4635452NA
LOC_Os11g08698OsAffx.18753.1.S1_at11/1111+4636454..4638950hypothetical protein
LOC_Os11g08698OsAffx.19202.1.S1_at1/1111+4636454..4638950hypothetical protein
LOC_Os11g08707Os.9658.1.S1_at11/1111+4639444..4640585expressed protein
LOC_Os11g08707OsAffx.18753.3.S1_x_at1/1111+4639444..4640585expressed protein
LOC_Os11g08720OsAffx.7657.1.S1_x_at1/1111+4642248..4643306hypothetical protein
LOC_Os11g08729OsAffx.1196.1.S1_at3/1111+4644252..4645409hypothetical protein
LOC_Os11g08729OsAffx.1196.1.S1_x_at1/1111+4644252..4645409hypothetical protein
LOC_Os11g08740OsAffx.30891.1.S1_at11/1111+4649403..4649678hypothetical protein
LOC_Os11g08740OsAffx.30891.1.S1_x_at6/1111+4649403..4649678hypothetical protein
LOC_Os11g08750Os.53818.1.S1_at11/1111+4651264..4653407Pectinesterase family protein, expressed
LOC_Os11g08760Os.9658.1.S1_at5/1111+4654891..4658106Pectinesterase family protein
LOC_Os11g08770OsAffx.25936.7.S1_s_at11/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.1.S1_s_at11/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.2.S1_x_at4/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.5.S1_x_at2/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08780NANA11+4664225..4664440hypothetical protein
LOC_Os11g08790Os.19439.2.S1_at11/1111+4665104..4666395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08800OsAffx.17922.1.S1_x_at5/1111+4666677..4668998hypothetical protein
LOC_Os11g08810Os.10827.1.S1_x_at11/1111+4669674..4672961transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08810Os.46055.2.S1_x_at5/1111+4669674..4672961transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007031biological_processperoxisome organization and biogenesis
GO:0005777cellular_componentperoxisome
GO:0005789cellular_componentendoplasmic reticulum membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30891.1.S1_at--544--4572Chr11:4701231..4701255 (25 bp)
GCGCGAATGCTCACCGCGCGTCTAT
LOC_Os11g08880
OsAffx.30891.1.S1_at--458--4132Chr11:4701232..4701256 (25 bp)
CGCGAATGCTCACCGCGCGTCTATT
LOC_Os11g08880
OsAffx.30891.1.S1_at--712--4832Chr11:4701239..4701263 (25 bp)
GCTCACCGCGCGTCTATTCCAGTGG
LOC_Os11g08880
OsAffx.30891.1.S1_at--1073--9672Chr11:4701241..4701265 (25 bp)
TCACCGCGCGTCTATTCCAGTGGCG
LOC_Os11g08880
OsAffx.30891.1.S1_at--406--1792Chr11:4701243..4701267 (25 bp)
ACCGCGCGTCTATTCCAGTGGCGCT
LOC_Os11g08880
OsAffx.30891.1.S1_at--669--4572Chr11:4701246..4701270 (25 bp)
GCGCGTCTATTCCAGTGGCGCTTTG
LOC_Os11g08880
OsAffx.30891.1.S1_at--14--4152Chr11:4701247..4701271 (25 bp)
CGCGTCTATTCCAGTGGCGCTTTGC
LOC_Os11g08880
OsAffx.30891.1.S1_at--612--4652Chr11:4701248..4701272 (25 bp)
GCGTCTATTCCAGTGGCGCTTTGCC
LOC_Os11g08880
OsAffx.30891.1.S1_at--1102--4012Chr11:4701249..4701273 (25 bp)
CGTCTATTCCAGTGGCGCTTTGCCA
LOC_Os11g08880
OsAffx.30891.1.S1_at--677--7152Chr11:4701250..4701274 (25 bp)
GTCTATTCCAGTGGCGCTTTGCCAA
LOC_Os11g08880
OsAffx.30891.1.S1_at--27--9553Chr11:4701251..4701275 (25 bp)
TCTATTCCAGTGGCGCTTTGCCAAC
LOC_Os11g08880
Target Sequence 
GCGCGAATGCTCACCGCGCGTCTATTCCAGTGGCGCTTTGCCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis