Browse Element(s) Details


Os.8169.1.S1_at

Description gb:AK072582.1
DB_XREF= gi:32982605
TID=Os.8169.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8169 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131J21, full insert sequence.
FL= gb:AK072582.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0886010/11expressed protein
LOC_Os11g0893010/11expressed protein
LOC_Os11g086803/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08770OsAffx.25936.7.S1_s_at11/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.1.S1_s_at11/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.2.S1_x_at4/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.5.S1_x_at2/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08780NANA11+4664225..4664440hypothetical protein
LOC_Os11g08790Os.19439.2.S1_at11/1111+4665104..4666395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08800OsAffx.17922.1.S1_x_at5/1111+4666677..4668998hypothetical protein
LOC_Os11g08810Os.10827.1.S1_x_at11/1111+4669674..4672961transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08810Os.46055.2.S1_x_at5/1111+4669674..4672961transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08820OsAffx.18753.3.S1_x_at1/1111+4674852..4675538hypothetical protein
LOC_Os11g08830OsAffx.18753.3.S1_x_at4/1111+4676567..4677510kelch repeat-containing F-box family protein, putative
LOC_Os11g08830OsAffx.18753.3.S1_at3/1111+4676567..4677510kelch repeat-containing F-box family protein, putative
LOC_Os11g08830OsAffx.22433.3.S1_s_at2/1111+4676567..4677510kelch repeat-containing F-box family protein, putative
LOC_Os11g08840OsAffx.30892.1.S1_at10/1111+4679452..4680615hypothetical protein
LOC_Os11g08850NANA11+4685094..4686462retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08860Os.8169.1.S1_at10/1111+4687378..4688578expressed protein
LOC_Os11g08870Os.53818.1.S1_at7/1111+4694022..4699515retrotransposon protein, putative, unclassified
LOC_Os11g08880OsAffx.30891.1.S1_at11/1111+4701168..4701798hypothetical protein
LOC_Os11g08880OsAffx.30891.1.S1_x_at8/1111+4701168..4701798hypothetical protein
LOC_Os11g08889OsAffx.1196.1.S1_at3/1111+4705407..4706564hypothetical protein
LOC_Os11g08889OsAffx.1196.1.S1_x_at1/1111+4705407..4706564hypothetical protein
LOC_Os11g08900OsAffx.7657.1.S1_x_at1/1111+4707510..4708568hypothetical protein
LOC_Os11g08909Os.9658.1.S1_at10/1111+4710246..4711282expressed protein
LOC_Os11g08909OsAffx.18753.3.S1_x_at1/1111+4710246..4711282expressed protein
LOC_Os11g08918OsAffx.18753.1.S1_at11/1111+4711866..4714362hypothetical protein
LOC_Os11g08918OsAffx.19202.1.S1_at1/1111+4711866..4714362hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8169.1.S1_at--364--5613Chr11:4630442..4630466 (25 bp)
GACAAGTTCCACCAAGCCTGGAAGA
LOC_Os11g08680
Os.8169.1.S1_at--525--5353Chr11:4630462..4630486 (25 bp)
GAAGATGTTGGGTGTCGCACACGAC
LOC_Os11g08680
Os.8169.1.S1_at--413--393Chr11:4630490..4630514 (25 bp)
ATCACGCAGATCCTAGGCACAAAGT
LOC_Os11g08680
Os.8169.1.S1_at--492--7653Chr11:4630555..4630579 (25 bp)
GGGAGGACTCGTGATCTCTTTCTTC
NONE
Os.8169.1.S1_at--534--10533Chr11:4630584..4630608 (25 bp)
TTCAGTCCTCTCTACTTTTCATTTT
NONE
Os.8169.1.S1_at--857--4532Chr11:4720096..4720120 (25 bp)
GCCCCTGGATACGTTCTATATGTTG
LOC_Os11g08930
Os.8169.1.S1_at--376--8833Chr11:4630735..4630759 (25 bp)
TGATTTGCCATCCTACTACCAGAAT
NONE
Os.8169.1.S1_at--666--10453Chr11:4630786..4630810 (25 bp)
TTAGCAACCCAAATACTTCCTTACA
NONE
Os.8169.1.S1_at--191--8953Chr11:4630830..4630854 (25 bp)
TGACGGGTGCGCATGTGTCTGTTCC
NONE
Os.8169.1.S1_at--911--6693Chr11:4630850..4630874 (25 bp)
GTTCCCACCTCCAATCGAGGAATAG
NONE
Os.8169.1.S1_at--518--273Chr11:4631016..4631040 (25 bp)
ATATGTAGCGGCTTTTGATTCTCTT
NONE
Target Sequence 
GACAAGTTCCACCAAGCCTGGAAGATGTTGGGTGTCGCACACGACCTCATCACGCAGATCCTAGGCACAAAGTCCTAGAT
ACATTAAGGGGCGGATCCATAACAAGATTTAAGGGGAGGACTCGTGATCTCTTTCTTCCTTGTTCAGTCCTCTCTACTTT
TCATTTTCTCTCTATTTTTCCCCCTTTCATTTCCCCTTCTACCAATGGTGGTCCAGCGGGATAGGGGGGACTCGAGTCCC
CCTAGCACCCACGTTGGATCCGCCCCTGGATACGTTCTATATGTTGGACATTTTGATTTGCCATCCTACTACCAGAATTT
ACCTATTAAATAAATCTTTCTAGGTTAGCAACCCAAATACTTCCTTACAACTGTTTTTTTTATTTATTTTGACGGGTGCG
CATGTGTCTGTTCCCACCTCCAATCGAGGAATAGGAATTTTTATCATACCAGTGTGGGTATTATTGTTATATACTCCTAT
GTTGTTGAAATAACTGAGATCGTTATTTTTAAGATGTGCACATTGTAACTATTTCTATGGGGAGAATGATTTCTATATAT
TGACTTGCACTAATAATATGTAGCGGCTTTTGATTCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis