Browse Element(s) Details


Os.51694.1.S1_at

Description gb:AK063438.1
DB_XREF= gi:32973456
TID=Os.51694.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51694 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-E09, full insert sequence.
FL= gb:AK063438.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0306011/11Cell division control protein 2 homolog 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03010OsAffx.24076.1.S1_at11/112+1185112..1186338expressed protein
LOC_Os02g03010OsAffx.24076.1.S1_s_at11/112+1185112..1186338expressed protein
LOC_Os02g03020OsAffx.11871.1.S1_s_at11/112+1187234..1187897calcium-binding protein, putative, expressed
LOC_Os02g03030OsAffx.24077.1.S1_at10/112+1190846..1192461PHD finger family protein, putative
LOC_Os02g03040Os.14104.1.A1_a_at11/112+1193388..1197056Arginine/serine-rich splicing factor RSP41, putative, expressed
LOC_Os02g03050OsAffx.24078.1.S1_at11/112+1198657..1202304ribosomal RNA adenine dimethylase family protein, expressed
LOC_Os02g03050Os.49378.1.S1_at11/112+1198657..1202304ribosomal RNA adenine dimethylase family protein, expressed
LOC_Os02g03060Os.51694.1.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.2.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.1.S1_x_at10/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03070Os.10080.1.S1_at10/112+1213995..1218034shrunken seed protein, putative, expressed
LOC_Os02g03070OsAffx.30891.1.S1_at1/112+1213995..1218034shrunken seed protein, putative, expressed
LOC_Os02g03080Os.48733.1.A1_at9/112+1219306..1222866Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g03080Os.48081.1.S1_at1/112+1219306..1222866Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g03090OsAffx.24079.1.S1_at11/112+1223725..1226826expressed protein
LOC_Os02g03100Os.5272.1.S1_at11/112+1227321..1230217NADP-dependent D-sorbitol-6-phosphate dehydrogenase, putative, expressed
LOC_Os02g03110Os.18465.1.S1_at11/112+1231029..1234484CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os02g03110Os.18465.2.S1_x_at9/112+1231029..1234484CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000086biological_processG2/M transition of mitotic cell cycle
GO:0000087biological_processM phase of mitotic cell cycle
GO:0000910biological_processcytokinesis
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0009826biological_processunidimensional cell growth
GO:0016572biological_processhistone phosphorylation
GO:0030154biological_processcell differentiation
GO:0042023biological_processDNA endoreduplication
GO:0000307cellular_componentcyclin-dependent protein kinase holoenzyme complex
GO:0005634cellular_componentnucleus
GO:0009574cellular_componentpreprophase band
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51694.1.S1_at--1136--6131Chr02:1208666..1208690 (25 bp)
GAGGTACATTTTACAGCCCGACACG
LOC_Os02g03060
Os.51694.1.S1_at--647--5611Chr02:1208685..1208709 (25 bp)
GACACGTTTTTCGTTTGGTACACTG
LOC_Os02g03060
Os.51694.1.S1_at--114--10411Chr02:1208714..1208738 (25 bp)
TTATAGTCCTTGCACATCACACTAC
LOC_Os02g03060
Os.51694.1.S1_at--552--2451Chr02:1208797..1208821 (25 bp)
AAAATTAACTTTGCCTCCTTCACTG
LOC_Os02g03060
Os.51694.1.S1_at--349--8451Chr02:1208852..1208876 (25 bp)
GGCCACATGTGTACTCTTTTTGCTA
LOC_Os02g03060
Os.51694.1.S1_at--515--2111Chr02:1208876..1208900 (25 bp)
ACATGTTGTGCTACTGTCTGTTTCA
LOC_Os02g03060
Os.51694.1.S1_at--217--2991Chr02:1208982..1209006 (25 bp)
AATGTCACCCATTAGTGCTCACTGT
LOC_Os02g03060
Os.51694.1.S1_at--1072--10491Chr02:1209021..1209045 (25 bp)
TTAAGACTGCTTGTATCTCTCTTCC
LOC_Os02g03060
Os.51694.1.S1_at--107--6471Chr02:1209083..1209107 (25 bp)
GATAATTTTCCAAGCCTACTGTCAT
LOC_Os02g03060
Os.51694.1.S1_at--715--7131Chr02:1209103..1209127 (25 bp)
GTCATAGTGCTTCTTTGTCAGTTTG
LOC_Os02g03060
Os.51694.1.S1_at--401--3091Chr02:1209175..1209199 (25 bp)
AATACCTGGACCTTTTTCTGTACTG
LOC_Os02g03060
Target Sequence 
GAGGTACATTTTACAGCCCGACACGTTTTTCGTTTGGTACACTGTGATTTATAGTCCTTGCACATCACACTACAGAAGAG
GGGAACTGTCTAATGGTGAAAACGTGCAGTTAATTTAGATGAGTACATCAAAAAATTAACTTTGCCTCCTTCACTGCAAT
GCATTTTGTAGGTGCTCTATTAAGTAGGCCACATGTGTACTCTTTTTGCTACATGTTGTGCTACTGTCTGTTTCATTGAA
TATCACGCATGTATTCACGGAGATATGGTACAAATTGTGGACTATGACCCTATGTCATGGCTGCCAACTGAAGATTAATG
TCACCCATTAGTGCTCACTGTTTTTATGGTACATCTTAAGACTGCTTGTATCTCTCTTCCCTCTACTGCCTTTTATAACT
GTTAAGAATCAATGGTAGATAATTTTCCAAGCCTACTGTCATAGTGCTTCTTTGTCAGTTTGAATTTTACTCTCATGGCA
ATATCTGGTGAAACCTATAAACCAGCACAAATACCTGGACCTTTTTCTGTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis