Browse Element(s) Details


OsAffx.24076.1.S1_s_at

Description tigr:9630.m00217
TID=OsAffx.24076.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0301011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02960Os.11527.1.S1_at11/112+1158885..1161235histone deacetylase complex subunit SAP18, putative, expressed
LOC_Os02g02970OsAffx.24074.1.S1_at11/112+1162143..1165062PAP/25A associated domain containing protein, expressed
LOC_Os02g02980OsAffx.2490.1.S1_at11/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02980Os.51951.1.S1_at1/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02990Os.16237.1.S1_at11/112+1173896..1177017expressed protein
LOC_Os02g03000OsAffx.24075.1.S1_at11/112+1178870..1181645division protein, putative, expressed
LOC_Os02g03010OsAffx.24076.1.S1_at11/112+1185112..1186338expressed protein
LOC_Os02g03010OsAffx.24076.1.S1_s_at11/112+1185112..1186338expressed protein
LOC_Os02g03020OsAffx.11871.1.S1_s_at11/112+1187234..1187897calcium-binding protein, putative, expressed
LOC_Os02g03030OsAffx.24077.1.S1_at10/112+1190846..1192461PHD finger family protein, putative
LOC_Os02g03040Os.14104.1.A1_a_at11/112+1193388..1197056Arginine/serine-rich splicing factor RSP41, putative, expressed
LOC_Os02g03050OsAffx.24078.1.S1_at11/112+1198657..1202304ribosomal RNA adenine dimethylase family protein, expressed
LOC_Os02g03050Os.49378.1.S1_at11/112+1198657..1202304ribosomal RNA adenine dimethylase family protein, expressed
LOC_Os02g03060Os.51694.1.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.2.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.1.S1_x_at10/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24076.1.S1_s_at--148--10511Chr02:1185249..1185273 (25 bp)
TTCCATTCTCCTCTTAATTAGGTTT
LOC_Os02g03010
OsAffx.24076.1.S1_s_at--448--2671Chr02:1185235..1185259 (25 bp)
TAATTAGGTTTTCTTTTGACTCCAT
LOC_Os02g03010
OsAffx.24076.1.S1_s_at--990--891Chr02:1185230..1185254 (25 bp)
AGGTTTTCTTTTGACTCCATAGCCG
LOC_Os02g03010
OsAffx.24076.1.S1_s_at--473--6811Chr02:1185228..1185252 (25 bp)
GTTTTCTTTTGACTCCATAGCCGAT
LOC_Os02g03010
OsAffx.24076.1.S1_s_at--543--10571Chr02:1185225..1185249 (25 bp)
TTCTTTTGACTCCATAGCCGATCTT
LOC_Os02g03010
OsAffx.24076.1.S1_s_at--634--10271Chr02:1185221..1185245 (25 bp)
TTTGACTCCATAGCCGATCTTGCGT
LOC_Os02g03010
OsAffx.24076.1.S1_s_at--814--1991Chr02:1185217..1185241 (25 bp)
ACTCCATAGCCGATCTTGCGTGTGT
LOC_Os02g03010
OsAffx.24076.1.S1_s_at--422--4331Chr02:1185214..1185238 (25 bp)
CCATAGCCGATCTTGCGTGTGTTCA
LOC_Os02g03010
OsAffx.24076.1.S1_s_at--868--9071Chr02:1185187..1185211 (25 bp)
TGCTTCACCTTCCACAGTGTTCATT
LOC_Os02g03010
OsAffx.24076.1.S1_s_at--939--10511Chr02:1185184..1185208 (25 bp)
TTCACCTTCCACAGTGTTCATTGGT
LOC_Os02g03010
OsAffx.24076.1.S1_s_at--715--4311Chr02:1185180..1185204 (25 bp)
CCTTCCACAGTGTTCATTGGTTCGT
LOC_Os02g03010
Target Sequence 
TTCCATTCTCCTCTTAATTAGGTTTTCTTTTGACTCCATAGCCGATCTTGCGTGTGTTCAGCTGCTTCACCTTCCACAGT
GTTCATTGGTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24076.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis