Browse Element(s) Details


OsAffx.24077.1.S1_at

Description tigr:9630.m00219
TID=OsAffx.24077.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SET domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0303010/11PHD finger family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02980OsAffx.2490.1.S1_at11/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02980Os.51951.1.S1_at1/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02990Os.16237.1.S1_at11/112+1173896..1177017expressed protein
LOC_Os02g03000OsAffx.24075.1.S1_at11/112+1178870..1181645division protein, putative, expressed
LOC_Os02g03010OsAffx.24076.1.S1_at11/112+1185112..1186338expressed protein
LOC_Os02g03010OsAffx.24076.1.S1_s_at11/112+1185112..1186338expressed protein
LOC_Os02g03020OsAffx.11871.1.S1_s_at11/112+1187234..1187897calcium-binding protein, putative, expressed
LOC_Os02g03030OsAffx.24077.1.S1_at10/112+1190846..1192461PHD finger family protein, putative
LOC_Os02g03040Os.14104.1.A1_a_at11/112+1193388..1197056Arginine/serine-rich splicing factor RSP41, putative, expressed
LOC_Os02g03050OsAffx.24078.1.S1_at11/112+1198657..1202304ribosomal RNA adenine dimethylase family protein, expressed
LOC_Os02g03050Os.49378.1.S1_at11/112+1198657..1202304ribosomal RNA adenine dimethylase family protein, expressed
LOC_Os02g03060Os.51694.1.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.2.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.1.S1_x_at10/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03070Os.10080.1.S1_at10/112+1213995..1218034shrunken seed protein, putative, expressed
LOC_Os02g03070OsAffx.30891.1.S1_at1/112+1213995..1218034shrunken seed protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24077.1.S1_at--1005--1011Chr02:1191643..1191667 (25 bp)
AGGTGCTACCAAAGGAGGACGTCGA
LOC_Os02g03030
OsAffx.24077.1.S1_at--182--1911Chr02:1191661..1191685 (25 bp)
ACGTCGAGACGCTGAATCTGTGCAA
LOC_Os02g03030
OsAffx.24077.1.S1_at--735--4251Chr02:1191751..1191775 (25 bp)
CCGTGGAGGCGGACAGGTTCATCAA
LOC_Os02g03030
OsAffx.24077.1.S1_at--1059--6731Chr02:1191767..1191791 (25 bp)
GTTCATCAAGGATCTCACCATCATC
LOC_Os02g03030
OsAffx.24077.1.S1_at--128--5751Chr02:1191840..1191864 (25 bp)
GACGGCGACAGCATGATGACCCTGC
LOC_Os02g03030
OsAffx.24077.1.S1_at--941--5611Chr02:1191906..1191930 (25 bp)
GACAAGCGGAGCAACATCGCTCGCT
LOC_Os02g03030
OsAffx.24077.1.S1_at--493--531Chr02:1191921..1191945 (25 bp)
ATCGCTCGCTTCATCAATGGCATCA
LOC_Os02g03030
OsAffx.24077.1.S1_at--582--2631NONE
AACCACACTCCAGATGGCCGGAAGA
NONE
OsAffx.24077.1.S1_at--1022--1511Chr02:1192316..1192340 (25 bp)
AGCAGAATCTCAAGTGCGTCCGCTT
LOC_Os02g03030
OsAffx.24077.1.S1_at--491--9591Chr02:1192367..1192391 (25 bp)
TCTTGGTGGCGAACAGGGACATCTC
LOC_Os02g03030
OsAffx.24077.1.S1_at--547--6211Chr02:1192401..1192425 (25 bp)
GAGGCTGTACTACGATTACAATGGA
LOC_Os02g03030
Target Sequence 
AGGTGCTACCAAAGGAGGACGTCGAGACGCTGAATCTGTGCAAGAGGATGATGGCGAGAGGCGAGTGGCCGCCTCTCCTC
GTCGTCTACGACCCCGTCGAGGGGTTCACCGTGGAGGCGGACAGGTTCATCAAGGATCTCACCATCATCACCGAGTACGT
CGGCGACGTCGACTACCTGACCCGCCGCGAGCACGACGACGGCGACAGCATGATGACCCTGCTGTCGGCGGCCACGCCGT
CGAGGAGCCTCGTCATCTGCCCCGACAAGCGGAGCAACATCGCTCGCTTCATCAATGGCATCAACAACCACACTCCAGAT
GGCCGGAAGAAGCAGAATCTCAAGTGCGTCCGCTTCGACGTCGGCGGCGAGTGCCGGGTGCTCTTGGTGGCGAACAGGGA
CATCTCCAAAGGGGAGAGGCTGTACTACGATTACAATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis