Browse Element(s) Details


OsAffx.24075.1.S1_at

Description tigr:9630.m00216
TID=OsAffx.24075.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to division protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0300011/11division protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02940Os.5096.1.S1_at9/112+1151848..1154292succinate dehydrogenase subunit 3, putative, expressed
LOC_Os02g02940OsAffx.16354.1.S1_x_at1/112+1151848..1154292succinate dehydrogenase subunit 3, putative, expressed
LOC_Os02g02950Os.56181.1.S1_at11/112+1154674..1156855pentatricopeptide, putative, expressed
LOC_Os02g02960Os.11527.1.S1_at11/112+1158885..1161235histone deacetylase complex subunit SAP18, putative, expressed
LOC_Os02g02970OsAffx.24074.1.S1_at11/112+1162143..1165062PAP/25A associated domain containing protein, expressed
LOC_Os02g02980OsAffx.2490.1.S1_at11/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02980Os.51951.1.S1_at1/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02990Os.16237.1.S1_at11/112+1173896..1177017expressed protein
LOC_Os02g03000OsAffx.24075.1.S1_at11/112+1178870..1181645division protein, putative, expressed
LOC_Os02g03010OsAffx.24076.1.S1_at11/112+1185112..1186338expressed protein
LOC_Os02g03010OsAffx.24076.1.S1_s_at11/112+1185112..1186338expressed protein
LOC_Os02g03020OsAffx.11871.1.S1_s_at11/112+1187234..1187897calcium-binding protein, putative, expressed
LOC_Os02g03030OsAffx.24077.1.S1_at10/112+1190846..1192461PHD finger family protein, putative
LOC_Os02g03040Os.14104.1.A1_a_at11/112+1193388..1197056Arginine/serine-rich splicing factor RSP41, putative, expressed
LOC_Os02g03050OsAffx.24078.1.S1_at11/112+1198657..1202304ribosomal RNA adenine dimethylase family protein, expressed
LOC_Os02g03050Os.49378.1.S1_at11/112+1198657..1202304ribosomal RNA adenine dimethylase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009658biological_processchloroplast organization and biogenesis
GO:0010020biological_processchloroplast fission
GO:0009706cellular_componentchloroplast inner membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24075.1.S1_at--487--6891Chr02:1179696..1179720 (25 bp)
GTATCAAATCTAAGGCCTTGGGACC
LOC_Os02g03000
OsAffx.24075.1.S1_at--534--8411Chr02:1179683..1179707 (25 bp)
GGCCTTGGGACCAGAACATTCGGTT
LOC_Os02g03000
OsAffx.24075.1.S1_at--646--4231Chr02:1179329..1179353 (25 bp)
CCGAGCAGCGGAGATTGAGCGTCAT
LOC_Os02g03000
OsAffx.24075.1.S1_at--466--7511Chr02:1179302..1179326 (25 bp)
GTGGTTCTGGGAGTATACACTATCC
LOC_Os02g03000
OsAffx.24075.1.S1_at--960--9811Chr02:1179287..1179311 (25 bp)
TACACTATCCGATGTGACGATTGAT
LOC_Os02g03000
OsAffx.24075.1.S1_at--816--2031Chr02:1179256..1179280 (25 bp)
ACTATCTCCCTAGATGGTCGACGAG
LOC_Os02g03000
OsAffx.24075.1.S1_at--436--1871Chr02:1179236..1179260 (25 bp)
ACGAGCGACTGTGGAGGCTACGATT
LOC_Os02g03000
OsAffx.24075.1.S1_at--55--8891Chr02:1179209..1179233 (25 bp)
TGAGGCAGGCCAACTTACTGATGTT
LOC_Os02g03000
OsAffx.24075.1.S1_at--1151--9911Chr02:1179194..1179218 (25 bp)
TACTGATGTTACTGAGCCCAGAAAC
LOC_Os02g03000
OsAffx.24075.1.S1_at--158--2191Chr02:1179147..1179171 (25 bp)
ACACTACCCGGTATGAGATGGCCTT
LOC_Os02g03000
OsAffx.24075.1.S1_at--1046--691Chr02:1179135..1179159 (25 bp)
ATGAGATGGCCTTCTCCAAGCTAGG
LOC_Os02g03000
Target Sequence 
GTATCAAATCTAAGGCCTTGGGACCAGAACATTCGGTTGCATCATTGCAAGAGGTTCTTGATGGCAACATGCTAAAGGTG
TGGACTGACCGAGCAGCGGAGATTGAGCGTCATGGGTGGTTCTGGGAGTATACACTATCCGATGTGACGATTGATAGCAT
CACTATCTCCCTAGATGGTCGACGAGCGACTGTGGAGGCTACGATTGATGAGGCAGGCCAACTTACTGATGTTACTGAGC
CCAGAAACAATGATTCATATGACACAAAATACACTACCCGGTATGAGATGGCCTTCTCCAAGCTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis