Browse Element(s) Details


Os.56181.1.S1_at

Description gb:AK109567.1
DB_XREF= gi:32994776
TID=Os.56181.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56181 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-D10, full insert sequence.
FL= gb:AK109567.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0295011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02910Os.52234.1.S1_at11/112+1126060..1132613expressed protein
LOC_Os02g02910Os.6440.1.S1_at1/112+1126060..1132613expressed protein
LOC_Os02g02920Os.8939.1.S1_s_at11/112+1134727..1139272HVA22-like protein i, putative, expressed
LOC_Os02g02930Os.57103.1.S1_at11/112+1145837..1151141Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g02940Os.5096.1.S1_at9/112+1151848..1154292succinate dehydrogenase subunit 3, putative, expressed
LOC_Os02g02940OsAffx.16354.1.S1_x_at1/112+1151848..1154292succinate dehydrogenase subunit 3, putative, expressed
LOC_Os02g02950Os.56181.1.S1_at11/112+1154674..1156855pentatricopeptide, putative, expressed
LOC_Os02g02960Os.11527.1.S1_at11/112+1158885..1161235histone deacetylase complex subunit SAP18, putative, expressed
LOC_Os02g02970OsAffx.24074.1.S1_at11/112+1162143..1165062PAP/25A associated domain containing protein, expressed
LOC_Os02g02980OsAffx.2490.1.S1_at11/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02980Os.51951.1.S1_at1/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02990Os.16237.1.S1_at11/112+1173896..1177017expressed protein
LOC_Os02g03000OsAffx.24075.1.S1_at11/112+1178870..1181645division protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56181.1.S1_at--1008--7431Chr02:1156334..1156358 (25 bp)
GTGTAGCCATTCCAAGCATGGTTCT
LOC_Os02g02950
Os.56181.1.S1_at--1134--4991Chr02:1156349..1156373 (25 bp)
GCATGGTTCTGGATGGTCTTTGCAT
LOC_Os02g02950
Os.56181.1.S1_at--280--7151Chr02:1156364..1156388 (25 bp)
GTCTTTGCATGACTGGTAGAGCTTC
LOC_Os02g02950
Os.56181.1.S1_at--861--2851Chr02:1156428..1156452 (25 bp)
AAGTGCTTTGGCTTCTGTCGCTGCA
LOC_Os02g02950
Os.56181.1.S1_at--305--7231Chr02:1156444..1156468 (25 bp)
GTCGCTGCACCTCGTAGTTTAGTTG
LOC_Os02g02950
Os.56181.1.S1_at--731--5111Chr02:1156468..1156492 (25 bp)
GCACTTCATCATGCACTGGAGGAAT
LOC_Os02g02950
Os.56181.1.S1_at--878--5631Chr02:1156526..1156550 (25 bp)
GACAGATGAGACGTGCAAGTGCCAG
LOC_Os02g02950
Os.56181.1.S1_at--840--8631Chr02:1156570..1156594 (25 bp)
TGGGTTGCTTTGTCCCAAGGAGCAT
LOC_Os02g02950
Os.56181.1.S1_at--377--971Chr02:1156587..1156611 (25 bp)
AGGAGCATTTCAATCGCATGCCCTT
LOC_Os02g02950
Os.56181.1.S1_at--772--9031Chr02:1156666..1156690 (25 bp)
TGCAGAAACTGTGCCTGATCCACTG
LOC_Os02g02950
Os.56181.1.S1_at--1069--1492Chr02:1156789..1156813 (25 bp)
AGCACCGGCCTGAACATTTATTGAT
LOC_Os02g02950
Target Sequence 
GTGTAGCCATTCCAAGCATGGTTCTGGATGGTCTTTGCATGACTGGTAGAGCTTCAGAAGCATTCCGGCTGNTCTATGAA
CTCATTGAGAACAGAAGTGCTTTGGCTTCTGTCGCTGCACCTCGTAGTTTAGTTGCACTTCATCATGCACTGGAGGAATC
CGGGAAAATGAAGGAAGCTGATTTTATTGCTAGACAGATGAGACGTGCAAGTGCCAGAATAAGGGAAAGAATGTAGTGGG
TTGCTTTGTCCCAAGGAGCATTTCAATCGCATGCCCTTTGCTTCTCCAAACAGGATGGACTAATAAGTGTGAACTTAAAA
GAACGAACAGGATGCAGAAACTGTGCCTGATCCACTGCCCCATAAGAAATGGATCAACCAACTGTATGATGTTAGAATGC
AGATTAATTCAGCAGATATCCTTTTTTTTTCAGGGAAACTATGGCGGGTGGATTAGCACCGGCCTGAACATTTATTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56181.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis