Browse Element(s) Details

Os.3428.2.S1_at

Description

gb:AK064363.1
DB_XREF= gi:32974381
TID=Os.3428.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3428 (NCBI UniGene Cluster)
UG_TITLE=O.sativa Rcdc2-2 gene for p34-cdc2 protein kinase
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B12, full insert sequence.
FL= gb:AK064363.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os02g03060	11/11	Cell division control protein 2 homolog 2, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os02g03010	OsAffx.24076.1.S1_at	11/11	2	+	1185112..1186338	expressed protein
LOC_Os02g03010	OsAffx.24076.1.S1_s_at	11/11	2	+	1185112..1186338	expressed protein
LOC_Os02g03020	OsAffx.11871.1.S1_s_at	11/11	2	+	1187234..1187897	calcium-binding protein, putative, expressed
LOC_Os02g03030	OsAffx.24077.1.S1_at	10/11	2	+	1190846..1192461	PHD finger family protein, putative
LOC_Os02g03040	Os.14104.1.A1_a_at	11/11	2	+	1193388..1197056	Arginine/serine-rich splicing factor RSP41, putative, expressed
LOC_Os02g03050	OsAffx.24078.1.S1_at	11/11	2	+	1198657..1202304	ribosomal RNA adenine dimethylase family protein, expressed
LOC_Os02g03050	Os.49378.1.S1_at	11/11	2	+	1198657..1202304	ribosomal RNA adenine dimethylase family protein, expressed
LOC_Os02g03060	Os.51694.1.S1_at	11/11	2	+	1207635..1211225	Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060	Os.3428.2.S1_at	11/11	2	+	1207635..1211225	Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060	Os.3428.1.S1_x_at	10/11	2	+	1207635..1211225	Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03070	Os.10080.1.S1_at	10/11	2	+	1213995..1218034	shrunken seed protein, putative, expressed
LOC_Os02g03070	OsAffx.30891.1.S1_at	1/11	2	+	1213995..1218034	shrunken seed protein, putative, expressed
LOC_Os02g03080	Os.48733.1.A1_at	9/11	2	+	1219306..1222866	Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g03080	Os.48081.1.S1_at	1/11	2	+	1219306..1222866	Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g03090	OsAffx.24079.1.S1_at	11/11	2	+	1223725..1226826	expressed protein
LOC_Os02g03100	Os.5272.1.S1_at	11/11	2	+	1227321..1230217	NADP-dependent D-sorbitol-6-phosphate dehydrogenase, putative, expressed
LOC_Os02g03110	Os.18465.1.S1_at	11/11	2	+	1231029..1234484	CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os02g03110	Os.18465.2.S1_x_at	9/11	2	+	1231029..1234484	CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0000074	biological_process	regulation of progression through cell cycle
GO:0000086	biological_process	G2/M transition of mitotic cell cycle
GO:0000087	biological_process	M phase of mitotic cell cycle
GO:0000910	biological_process	cytokinesis
GO:0007346	biological_process	regulation of progression through mitotic cell cycle
GO:0009826	biological_process	unidimensional cell growth
GO:0016572	biological_process	histone phosphorylation
GO:0030154	biological_process	cell differentiation
GO:0042023	biological_process	DNA endoreduplication
GO:0000307	cellular_component	cyclin-dependent protein kinase holoenzyme complex
GO:0005634	cellular_component	nucleus
GO:0009574	cellular_component	preprophase band
GO:0010005	cellular_component	cortical microtubule (sensu Viridiplantae)
GO:0004693	molecular_function	cyclin-dependent protein kinase activity
GO:0005515	molecular_function	protein binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.3428.2.S1_at--808--429	1	Chr02:1211077..1211101 (25 bp)	CCTTATTGCGGGAGCTCTACATTGC	LOC_Os02g03060
Os.3428.2.S1_at--844--1039	1	Chr02:1211079..1211103 (25 bp)	TTATTGCGGGAGCTCTACATTGCAA	LOC_Os02g03060
Os.3428.2.S1_at--691--467	1	Chr02:1211084..1211108 (25 bp)	GCGGGAGCTCTACATTGCAATTTTG	LOC_Os02g03060
Os.3428.2.S1_at--526--343	1	Chr02:1211125..1211149 (25 bp)	CAGTTCCAGGACTGCTGGGATTTTA	LOC_Os02g03060
Os.3428.2.S1_at--151--813	1	Chr02:1211133..1211157 (25 bp)	GGACTGCTGGGATTTTAAGCTGCCA	LOC_Os02g03060
Os.3428.2.S1_at--246--199	1	Chr02:1211135..1211159 (25 bp)	ACTGCTGGGATTTTAAGCTGCCAAT	LOC_Os02g03060
Os.3428.2.S1_at--417--863	1	Chr02:1211140..1211164 (25 bp)	TGGGATTTTAAGCTGCCAATGTGGC	LOC_Os02g03060
Os.3428.2.S1_at--257--921	1	Chr02:1211153..1211177 (25 bp)	TGCCAATGTGGCATGGACTTCTCCA	LOC_Os02g03060
Os.3428.2.S1_at--908--1057	1	Chr02:1211171..1211195 (25 bp)	TTCTCCAGTCATTCAACCAGTTAAT	LOC_Os02g03060
Os.3428.2.S1_at--548--433	1	Chr02:1211175..1211199 (25 bp)	CCAGTCATTCAACCAGTTAATTTAA	LOC_Os02g03060
Os.3428.2.S1_at--967--973	1	Chr02:1211192..1211216 (25 bp)	TAATTTAAACTCTTTTGCCAACATT	LOC_Os02g03060

Target Sequence

CCTTATTGCGGGAGCTCTACATTGCAATTTTGCTCTCTTGNNNANANCCAGTTCCAGGACTGCTGGGATTTTAAGCTGCC
AATGTGGCATGGACTTCTCCAGTCATTCAACCAGTTAATTTAAACTCTTTTGCCAACATT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis