Browse Element(s) Details


Os.4157.1.S1_at

Description gb:L29470.1
DB_XREF= gi:600768
GEN=Cyp2
TID=Os.4157.1
CNT=207
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.4157 (NCBI UniGene Cluster)
DEF=Oryza sativa cyclophilin 2 (Cyp2) mRNA, complete cds.
PROD=cyclophilin 2
FL= gb:AK061894.1 gb:AK098919.1 gb:L29470.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0289011/11Peptidyl-prolyl cis-trans isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02860Os.7227.1.S1_at11/112+1090375..1095969Glutamyl-tRNA synthetase, putative, expressed
LOC_Os02g02870Os.4724.1.S1_at11/112+1103043..1104294Zinc knuckle family protein, expressed
LOC_Os02g02880Os.11422.1.S1_at11/112+1106261..1111999expressed protein
LOC_Os02g02890Os.4157.1.S1_s_at11/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.4157.1.S1_at11/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.57490.1.S1_x_at10/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.25594.1.S1_at1/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02900OsAffx.11869.1.S1_at11/112+1123522..1125414expressed protein
LOC_Os02g02910Os.52234.1.S1_at11/112+1126060..1132613expressed protein
LOC_Os02g02910Os.6440.1.S1_at1/112+1126060..1132613expressed protein
LOC_Os02g02920Os.8939.1.S1_s_at11/112+1134727..1139272HVA22-like protein i, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0007165biological_processsignal transduction
GO:0005829cellular_componentcytosol
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0016018molecular_functioncyclosporin A binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4157.1.S1_at--951--1211Chr02:1116446..1116470 (25 bp)
AGTTCAAGCACGACAGCCCCGGCAT
LOC_Os02g02890
Os.4157.1.S1_at--1150--1951Chr02:1116499..1116523 (25 bp)
ACTAACGGGTCCCAGTTCTTCATCT
LOC_Os02g02890
Os.4157.1.S1_at--862--3831Chr02:1116534..1116558 (25 bp)
CTGCAGCTGGCTGGACGGGAAGCAC
LOC_Os02g02890
Os.4157.1.S1_at--934--8431Chr02:1116600..1116624 (25 bp)
GGCCATCGAGAAGGTGGGATCCCGC
LOC_Os02g02890
Os.4157.1.S1_at--775--6891Chr02:1116709..1116733 (25 bp)
GTATCAGTCGTCTTGAGTCGTCGAG
LOC_Os02g02890
Os.4157.1.S1_at--716--391Chr02:1116711..1116735 (25 bp)
ATCAGTCGTCTTGAGTCGTCGAGTC
LOC_Os02g02890
Os.4157.1.S1_at--99--7131Chr02:1116718..1116742 (25 bp)
GTCTTGAGTCGTCGAGTCCCTAAAT
LOC_Os02g02890
Os.4157.1.S1_at--320--10771Chr02:1116721..1116745 (25 bp)
TTGAGTCGTCGAGTCCCTAAATAAG
LOC_Os02g02890
Os.4157.1.S1_at--306--7191Chr02:1116725..1116749 (25 bp)
GTCGTCGAGTCCCTAAATAAGGAGG
LOC_Os02g02890
Os.4157.1.S1_at--283--7491Chr02:1116758..1116782 (25 bp)
GTGGTGTTAGTCTTTTTATGAGTTC
LOC_Os02g02890
Os.4157.1.S1_at--407--7151Chr02:1116767..1116791 (25 bp)
GTCTTTTTATGAGTTCGTGTCGTGT
LOC_Os02g02890
Target Sequence 
AGTTCAAGCACGACAGCCCCGGCATCCTGTCCATGGCGAACGCCGGGCCCAACACTAACGGGTCCCAGTTCTTCATCTGC
ACCGTGCCCTGCAGCTGGCTGGACGGGAAGCACGTCGTGTTCGGCCGCGTCGTCGAGGGCATGGACGTCGTCAAGGCCAT
CGAGAAGGTGGGATCCCGCGGCGGGAGCACCGCCAAGCCNGGTCGTCATCGCCGACTGCGGCCAGCTCTCCTAGATCTGT
GCTGTTCCCCTTCGCCTTTCGCCAGTATCAGTCGTCTTGAGTCGTCGAGTCCCTAAATAAGGAGGAGGTGGTGGTGGTGT
TAGTCTTTTTATGAGTTCGTGTCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis