Browse Element(s) Details


Os.52287.1.S1_at

Description gb:AK066100.1
DB_XREF= gi:32976118
TID=Os.52287.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52287 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-167-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059H10, full insert sequence.
FL= gb:AK066100.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0280010/11LOC124512 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02750Os.25097.1.S1_at11/112+1040539..1045797CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os02g02770Os.52476.1.S1_at11/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02770Os.52476.1.S2_at10/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02780Os.26226.1.S1_at10/112+1050786..1056830protein kinase family protein, putative, expressed
LOC_Os02g02790Os.56801.1.S1_at11/112+1061877..1066211C2 domain containing protein, expressed
LOC_Os02g02800Os.52287.1.S1_at10/112+1067045..1069130LOC124512 protein, putative, expressed
LOC_Os02g02810OsAffx.2489.1.S1_s_at11/112+1069636..1072087expressed protein
LOC_Os02g02810OsAffx.2489.1.S1_at10/112+1069636..1072087expressed protein
LOC_Os02g02810Os.52287.2.S1_at1/112+1069636..1072087expressed protein
LOC_Os02g02820Os.50000.1.S1_at11/112+1073553..1076776Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g02830Os.22788.1.S1_at11/112+1078475..1079652Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os02g02840Os.2448.1.S1_at11/112+1080513..1084282RAC-like GTP binding protein RHO1, putative, expressed
LOC_Os02g02850OsAffx.24073.1.S1_at9/112+1086750..1089571C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os02g02860Os.7227.1.S1_at11/112+1090375..1095969Glutamyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52287.1.S1_at--348--8091Chr02:1068358..1068382 (25 bp)
GGAGCCGATGTGCTTTACGACTCAG
LOC_Os02g02800
Os.52287.1.S1_at--1034--6851Chr02:1068482..1068506 (25 bp)
GTTTGATGATCTCTTCGCGACAGTC
LOC_Os02g02800
Os.52287.1.S1_at--1085--4591Chr02:1068498..1068522 (25 bp)
GCGACAGTCTCATTTCTCTTGGAAA
LOC_Os02g02800
Os.52287.1.S1_at--1117--371Chr02:1068553..1068673 (25 bp)
ATCACAATCGCAGTGGTCATCATTT
LOC_Os02g02800
Os.52287.1.S1_at--978--10471Chr02:1068711..1068735 (25 bp)
TTAAAGCTTCGGGATGGCTTCTCCT
LOC_Os02g02800
Os.52287.1.S1_at--118--5191NONE
GCAAGGCTGCTTCACTACGAGGGAA
NONE
Os.52287.1.S1_at--562--5531Chr02:1068804..1068828 (25 bp)
GAAAAACCGAACTGCTCTTCAGCTG
LOC_Os02g02800
Os.52287.1.S1_at--290--1211Chr02:1068847..1068871 (25 bp)
AGTTATGTTCCATGCGGTTCAGCCT
LOC_Os02g02800
Os.52287.1.S1_at--86--9251Chr02:1068913..1068937 (25 bp)
TCCTCCGCACACAGGTTAACTTTTA
LOC_Os02g02800
Os.52287.1.S1_at--1110--2171Chr02:1068940..1068964 (25 bp)
ACACTAGGTGATTTCCAGGAGCAAC
LOC_Os02g02800
Os.52287.1.S1_at--349--5231Chr02:1069069..1069093 (25 bp)
GAATATTACACATCTCTACACGGGA
LOC_Os02g02800
Target Sequence 
GGAGCCGATGTGCTTTACGACTCAGCAAAGTTTGATGATCTCTTCGCGACAGTCTCATTTCTCTTGGAAAATTCCCCGGG
GGCGATGTTCATAACCACATATCACAATCGCAGTGGTCATCATTTGATTGAATTTTTAATGGTGAAGTGGGGTTTGAAGT
GTTTAAAGCTTCGGGATGGCTTCTCCTTCCTTCCGTCATGCAAGGCTGCTTCACTACGAGGGAACATTCAGCTTGTTGAG
ATTGCACTTGACAAGGAAAAACCGAACTGCTCTTCAGCTGACGAGAACAATCTGTAGCAGTTATGTTCCATGCGGTTCAG
CCTTATGGGGGCTGAAGGCAAGAACATGGCACAACTTTGGGGCATCCTCCGCACACAGGTTAACTTTTATAACACTAGGT
GATTTCCAGGAGCAACATCATGTAAAATTGCCCGTACAAAATATTCTCAAGTTTAACCATGGATTGTATTTGTTGGACAA
GCTTGTTAAACGAAGATTCACCAAACCAATAGTTATGACAGAATATTACACATCTCTACACGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis