Browse Element(s) Details


OsAffx.24073.1.S1_at

Description tigr:9630.m00197
TID=OsAffx.24073.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=5,10-methylenetetrahydrofolate dehydrogenase-5,10-methenyltetrahydrofolate cyclohydrolase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g028509/11C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02790Os.56801.1.S1_at11/112+1061877..1066211C2 domain containing protein, expressed
LOC_Os02g02800Os.52287.1.S1_at10/112+1067045..1069130LOC124512 protein, putative, expressed
LOC_Os02g02810OsAffx.2489.1.S1_s_at11/112+1069636..1072087expressed protein
LOC_Os02g02810OsAffx.2489.1.S1_at10/112+1069636..1072087expressed protein
LOC_Os02g02810Os.52287.2.S1_at1/112+1069636..1072087expressed protein
LOC_Os02g02820Os.50000.1.S1_at11/112+1073553..1076776Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g02830Os.22788.1.S1_at11/112+1078475..1079652Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os02g02840Os.2448.1.S1_at11/112+1080513..1084282RAC-like GTP binding protein RHO1, putative, expressed
LOC_Os02g02850OsAffx.24073.1.S1_at9/112+1086750..1089571C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os02g02860Os.7227.1.S1_at11/112+1090375..1095969Glutamyl-tRNA synthetase, putative, expressed
LOC_Os02g02870Os.4724.1.S1_at11/112+1103043..1104294Zinc knuckle family protein, expressed
LOC_Os02g02880Os.11422.1.S1_at11/112+1106261..1111999expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009396biological_processfolic acid and derivative biosynthesis
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24073.1.S1_at--471--9171NONE
TGCCCCTACCTCATCATATGAATGA
NONE
OsAffx.24073.1.S1_at--684--9011Chr02:1088064..1088088 (25 bp)
TGCAATGCAAGGTCGGGATCCGTTC
LOC_Os02g02850
OsAffx.24073.1.S1_at--1005--10771Chr02:1088038..1088062 (25 bp)
TTGTTCCATGCACCCCTAAAGGATG
LOC_Os02g02850
OsAffx.24073.1.S1_at--1111--7971Chr02:1087936..1087960 (25 bp)
GGATGCCTGCTGCATTATTACTGCA
LOC_Os02g02850
OsAffx.24073.1.S1_at--1156--4731Chr02:1087739..1087763 (25 bp)
GCTGTTGGAGTTGCTAATCTGGTCA
LOC_Os02g02850
OsAffx.24073.1.S1_at--447--7951Chr02:1087705..1087729 (25 bp)
GGATAAAGCCTGGTGCTGCTATTAT
LOC_Os02g02850
OsAffx.24073.1.S1_at--487--6651NONE
GTTGATGATCCAGAAAGCCCTCGAG
NONE
OsAffx.24073.1.S1_at--143--4191Chr02:1086885..1086909 (25 bp)
CCCTCGAGGTTATCGGCTGGTTGGA
LOC_Os02g02850
OsAffx.24073.1.S1_at--226--6271Chr02:1086860..1086884 (25 bp)
GATGTGTGCTACGAGGAGGCCTCCA
LOC_Os02g02850
OsAffx.24073.1.S1_at--1025--51Chr02:1086833..1086857 (25 bp)
ATTGCAGGACTAATCACGCCAGTTC
LOC_Os02g02850
OsAffx.24073.1.S1_at--751--6331Chr02:1086780..1086804 (25 bp)
GATGCTTTTGTCGAACACACTTGAG
LOC_Os02g02850
Target Sequence 
TGCCCCTACCTCATCATATGAATGATGAGAACATTTTGAATGCTGTTAGTATTGAGAAGGATGTTGATGGATTTCATCCA
CTGAACATTGGACGACTTGCAATGCAAGGTCGGGATCCGTTCTTTGTTCCATGCACCCCTAAAGGATGCATGGAATTACT
ACACAGATATGGAGTTGAAATCAAAGGGAAGAGAGCTGTTGTAATTGGGCGGAGCAATATTGTGGGGATGCCTGCTGCAT
TATTACTGCAAAAAGCCAACGCAACTGTTAGCATTGTACATTCAAATACCAAGAAGCCTGAGGAAATAACAAGACAAGCA
GATATTGTTATCGCAGCTGTTGGAGTTGCTAATCTGGTCAGAGGGAGTTGGATAAAGCCTGGTGCTGCTATTATTGATGT
TGGCATCAATCCAGTTGATGATCCAGAAAGCCCTCGAGGTTATCGGCTGGTTGGAGATGTGTGCTACGAGGAGGCCTCCA
AGATTGCAGGACTAATCACGCCAGTTCCTGGTGGTGTCGGGCCAATGACAATTGCGATGCTTTTGTCGAACACACTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis