Browse Element(s) Details


Os.52476.1.S2_at

Description gb:AK067383.1
DB_XREF= gi:32977401
TID=Os.52476.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033051C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100B15, full insert sequence.
FL= gb:AK101590.1 gb:AK067383.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0277010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02720Os.12213.1.S1_at11/112+1022080..1024751Syntaxin 51, putative, expressed
LOC_Os02g02730OsAffx.11867.1.S1_x_at11/112+1029925..1034242expressed protein
LOC_Os02g02730Os.55372.1.S1_x_at1/112+1029925..1034242expressed protein
LOC_Os02g02740Os.25440.1.S1_x_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740OsAffx.11868.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740Os.25440.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02750Os.25097.1.S1_at11/112+1040539..1045797CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os02g02770Os.52476.1.S1_at11/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02770Os.52476.1.S2_at10/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02780Os.26226.1.S1_at10/112+1050786..1056830protein kinase family protein, putative, expressed
LOC_Os02g02790Os.56801.1.S1_at11/112+1061877..1066211C2 domain containing protein, expressed
LOC_Os02g02800Os.52287.1.S1_at10/112+1067045..1069130LOC124512 protein, putative, expressed
LOC_Os02g02810OsAffx.2489.1.S1_s_at11/112+1069636..1072087expressed protein
LOC_Os02g02810OsAffx.2489.1.S1_at10/112+1069636..1072087expressed protein
LOC_Os02g02810Os.52287.2.S1_at1/112+1069636..1072087expressed protein
LOC_Os02g02820Os.50000.1.S1_at11/112+1073553..1076776Helix-loop-helix DNA-binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52476.1.S2_at--827--6691Chr02:1047992..1048016 (25 bp)
GTTCCAGGTCATATTACTCTTTGCT
LOC_Os02g02770
Os.52476.1.S2_at--392--7831Chr02:1047959..1047983 (25 bp)
GGTAACTTACCAGCAGCTTGTGGAT
LOC_Os02g02770
Os.52476.1.S2_at--959--3191Chr02:1047898..1047922 (25 bp)
CAATGGAGTACTTCATTCCCTGCAT
LOC_Os02g02770
Os.52476.1.S2_at--187--3831Chr02:1047879..1047903 (25 bp)
CTGCATTTCGGAGCTGAGGTCACGG
LOC_Os02g02770
Os.52476.1.S2_at--323--7091Chr02:1047861..1047885 (25 bp)
GTCACGGAACAGGTCCCGGATTTCG
LOC_Os02g02770
Os.52476.1.S2_at--258--10831Chr02:1047824..1047848 (25 bp)
TTGGCCAACTGGTTTAGCGGTTCGA
LOC_Os02g02770
Os.52476.1.S2_at--21--10451Chr02:1047811..1047835 (25 bp)
TTAGCGGTTCGAAGCACTCTCCGGT
LOC_Os02g02770
Os.52476.1.S2_at--451--7811Chr02:1047789..1047813 (25 bp)
GGTCGGGTTCTGACTTCTCAAATAT
LOC_Os02g02770
Os.52476.1.S2_at--64--8271Chr02:1047763..1047787 (25 bp)
GGCAGCACCCGAGTAATGGCACATT
LOC_Os02g02770
Os.52476.1.S2_at--106--211Chr02:1047658..1047682 (25 bp)
ATTTGTTTGCCAGCATGCCAAGCAT
LOC_Os02g02770
Os.52476.1.S2_at--1124--6051Chr02:1047534..1047558 (25 bp)
GAGTTGCATCAATTTCTTTCTTTTA
NONE
Target Sequence 
GTTCCAGGTCATATTACTCTTTGCTTAAACTGAGGTAACTTACCAGCAGCTTGTGGATTTTCAATTAGGCTGGAGATAAG
TTCATAGGAGCTGGCAATGGAGTACTTCATTCCCTGCATTTCGGAGCTGAGGTCACGGAACAGGTCCCGGATTTCGCCGT
TCAGTCTCTTGGCCAACTGGTTTAGCGGTTCGAAGCACTCTCCGGTCGGGTTCTGACTTCTCAAATATGGGCAGCACCCG
AGTAATGGCACATTGATCANTGCAAACTTCCTTGCTCCTAAATTGTATAATGTCTACAAGAATACTTCAACAGTTACTAA
CTTAATAAAACATAATTTGTTTGCCAGCATGCCAAGCATTTCGAGTTTGAGTTGCATTTGGTGGACAATTGAAATGAGGG
AGTATGTTCTGTTCAAAATTTCNNNTATATTGATTCNNNCTNAAGTAAAATGTAACATGAGTTGCATCAATTTCTTTCTT
TTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52476.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis