Browse Element(s) Details


Os.55372.1.S1_x_at

Description gb:AK107964.1
DB_XREF= gi:32993173
TID=Os.55372.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55372 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-C12, full insert sequence.
FL= gb:AK107964.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g027301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02680NANA2+999809..1005369Leucine Rich Repeat family protein, expressed
LOC_Os02g02690Os.51108.1.S1_at5/112+1008675..1011816expressed protein
LOC_Os02g02700Os.9153.1.S1_at11/112+1014016..1016213AMP-binding enzyme family protein, expressed
LOC_Os02g02710Os.24694.1.S1_at11/112+1017511..1021998zinc carboxypeptidase family protein, putative, expressed
LOC_Os02g02720Os.12213.1.S1_at11/112+1022080..1024751Syntaxin 51, putative, expressed
LOC_Os02g02730OsAffx.11867.1.S1_x_at11/112+1029925..1034242expressed protein
LOC_Os02g02730Os.55372.1.S1_x_at1/112+1029925..1034242expressed protein
LOC_Os02g02740Os.25440.1.S1_x_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740OsAffx.11868.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740Os.25440.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02750Os.25097.1.S1_at11/112+1040539..1045797CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os02g02770Os.52476.1.S1_at11/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02770Os.52476.1.S2_at10/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02780Os.26226.1.S1_at10/112+1050786..1056830protein kinase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55372.1.S1_x_at--475--9211Chr02:1034203..1034227 (25 bp)
TGCCAATGCCACTGTCACTGCCAAG
LOC_Os02g02730
Os.55372.1.S1_x_at--600--4531Chr02:1034227..1034251 (25 bp)
GCCCAACCAAAATTGATTTGACCAT
NONE
Os.55372.1.S1_x_at--1080--6511Chr02:1034241..1034265 (25 bp)
GATTTGACCATTTTTTTCCCTCAGG
NONE
Os.55372.1.S1_x_at--935--8931Chr02:1034256..1034280 (25 bp)
TTCCCTCAGGAACACCAAACCAAAG
NONE
Os.55372.1.S1_x_at--239--3231Chr02:1034313..1034337 (25 bp)
CAAGTTGGATAGTGGTAACTGATAC
NONE
Os.55372.1.S1_x_at--451--6051Chr02:1034360..1034384 (25 bp)
GAGATTTAGCTAGAGATCACTGATG
NONE
Os.55372.1.S1_x_at--1039--6313Chr04:33569386..33569405 (20 bp)
GATGAAGAATACTGAATACACACAC
NONE
Os.55372.1.S1_x_at--15--3311Chr02:1034399..1034423 (25 bp)
CACACACAGTGTATATAGCGTCAAA
NONE
Os.55372.1.S1_x_at--903--9991Chr02:1034414..1034438 (25 bp)
TAGCGTCAAAATTCATTAATTGCAT
NONE
Os.55372.1.S1_x_at--307--3171Chr02:1034431..1034455 (25 bp)
AATTGCATGATCAGTTGTTCGTTTC
NONE
Os.55372.1.S1_x_at--1051--3431Chr02:1034442..1034466 (25 bp)
CAGTTGTTCGTTTCTTGTACTTACA
NONE
Target Sequence 
TGCCAATGCCACTGTCACTGCCAAGCCCAACCAAAATTGATTTGACCATTTTTTTCCCTCAGGAACACCAAACCAAAGGC
AGAAAAGGAATAGAAAGAAAGAAGAGAATACAAGTTGGATAGTGGTAACTGATACATATTTTTGTACAAATTTCATAGAG
ATTTAGCTAGAGATCACTGATGAAGAATACTGAATACACACACAGTGTATATAGCGTCAAAATTCATTAATTGCATGATC
AGTTGTTCGTTTCTTGTACTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55372.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis