Browse Element(s) Details


Os.51108.1.S1_at

Description gb:AK060693.1
DB_XREF= gi:32970711
TID=Os.51108.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51108 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-C12, full insert sequence.
FL= gb:AK060693.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g026905/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02660OsAffx.459.1.S1_at9/112+978126..987135retrotransposon protein, putative, unclassified
LOC_Os02g02660Os.23222.1.S1_at1/112+978126..987135retrotransposon protein, putative, unclassified
LOC_Os02g02670OsAffx.24072.1.S1_at11/112+988442..995506NB-ARC domain containing protein
LOC_Os02g02680NANA2+999809..1005369Leucine Rich Repeat family protein, expressed
LOC_Os02g02690Os.51108.1.S1_at5/112+1008675..1011816expressed protein
LOC_Os02g02700Os.9153.1.S1_at11/112+1014016..1016213AMP-binding enzyme family protein, expressed
LOC_Os02g02710Os.24694.1.S1_at11/112+1017511..1021998zinc carboxypeptidase family protein, putative, expressed
LOC_Os02g02720Os.12213.1.S1_at11/112+1022080..1024751Syntaxin 51, putative, expressed
LOC_Os02g02730OsAffx.11867.1.S1_x_at11/112+1029925..1034242expressed protein
LOC_Os02g02730Os.55372.1.S1_x_at1/112+1029925..1034242expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51108.1.S1_at--325--10771Chr02:1009408..1009432 (25 bp)
TTGAGCATCATCTCTTGCGTGACAC
LOC_Os02g02690
Os.51108.1.S1_at--73--2491Chr02:1009371..1009395 (25 bp)
AACAGTACCGGCACTACATAGGATC
LOC_Os02g02690
Os.51108.1.S1_at--626--7871Chr02:1008882..1008906 (25 bp)
GGTTTCACGGTTGCGCGAGTACCAA
LOC_Os02g02690
Os.51108.1.S1_at--339--6131Chr02:1008722..1008746 (25 bp)
GAGGGCATGCAATGGACGATTCATC
LOC_Os02g02690
Os.51108.1.S1_at--1096--7211Chr02:1008695..1008719 (25 bp)
GTCGAAATGGATCTGAAGCCTCACC
LOC_Os02g02690
Os.51108.1.S1_at--1016--451Chr02:1008645..1008669 (25 bp)
ATCTCTCCAGGAGTGCAGGCATCTT
NONE
Os.51108.1.S1_at--952--8271Chr02:1008628..1008652 (25 bp)
GGCATCTTTCATGTTTGTTTCCAGA
NONE
Os.51108.1.S1_at--533--6491Chr02:1008599..1008623 (25 bp)
GATAGCCTGTGGATGTTGCCATGCC
NONE
Os.51108.1.S1_at--751--3611Chr02:1008574..1008598 (25 bp)
CTTGTTCCACTTTACAGGCTTGTTG
NONE
Os.51108.1.S1_at--85--2131Chr02:1008561..1008585 (25 bp)
ACAGGCTTGTTGTTTATTGCTCCCA
NONE
Os.51108.1.S1_at--628--10711Chr02:1008545..1008569 (25 bp)
TTGCTCCCAGCTGATTGCCGAGTAA
NONE
Target Sequence 
TTGAGCATCATCTCTTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGGAAATATCTAGTAGAG
GCCACGAAAGAAGCATCCAATTCTTATACNGAAGCGGTTTCACGGTTGCGCGAGTACCAAGGTGTAGATCCACACTTTGA
TGTAATTGCAAGGCAATACCATGAGATTGTAAAGAAACTGGAGGGCATGCAATGGACGATTCATCAGGTCGAAATGGATC
TGAAGCCTCACCATGACCATGCAGNTGTCTAGGCTCCATCTCTCCAGGAGTGCAGGCATCTTTCATGTTTGTTTCCAGAA
TGTGATAGCCTGTGGATGTTGCCATGCCCTTGTTCCACTTTACAGGCTTGTTGTTTATTGCTCCCAGCTGATTGCCGAGT
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis