Browse Element(s) Details


OsAffx.459.1.S1_at

Description gb:XM_354499.1
DB_XREF= gi:35191950
GEN=OJ1339_F05.9
TID=OsAffx.459.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g026609/11retrotransposon protein, putative, unclassified
LOC_Os11g365109/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02600Os.39168.1.S1_at11/112+950728..954690serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os02g02610OsAffx.29313.1.S1_at1/112+956628..960792transposon protein, putative, Mutator sub-class
LOC_Os02g02620Os.51842.1.S1_at11/112+961519..965543sialyltransferase, putative, expressed
LOC_Os02g02630OsAffx.24069.1.S1_at11/112+965931..966388hypothetical protein
LOC_Os02g02640OsAffx.24070.1.S1_at10/112+967172..974497NBS-LRR disease resistance protein, putative
LOC_Os02g02650OsAffx.24071.1.S1_at11/112+975623..976077hypothetical protein
LOC_Os02g02660OsAffx.459.1.S1_at9/112+978126..987135retrotransposon protein, putative, unclassified
LOC_Os02g02660Os.23222.1.S1_at1/112+978126..987135retrotransposon protein, putative, unclassified
LOC_Os02g02670OsAffx.24072.1.S1_at11/112+988442..995506NB-ARC domain containing protein
LOC_Os02g02680NANA2+999809..1005369Leucine Rich Repeat family protein, expressed
LOC_Os02g02690Os.51108.1.S1_at5/112+1008675..1011816expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.459.1.S1_at--334--6511Chr07:25898319..25898343 (25 bp)
GATATACTCAGTACGTGCGCTTTCA
NONE
OsAffx.459.1.S1_at--408--1913Chr11:21046029..21046053 (25 bp)
ACGTGCGCTTTCACCAGGAGAGTAT
LOC_Os11g36510
OsAffx.459.1.S1_at--713--8213Chr11:21046077..21046101 (25 bp)
GGAATCAATTTCCTCTTGCCTACAG
LOC_Os11g36510
OsAffx.459.1.S1_at--968--10673Chr11:21046092..21046116 (25 bp)
TTGCCTACAGAGAACGAACCAGCCC
LOC_Os11g36510
OsAffx.459.1.S1_at--751--2633Chr11:21046108..21046132 (25 bp)
AACCAGCCCTGGCAGATTGGTGGAT
LOC_Os11g36510
OsAffx.459.1.S1_at--111--696Chr11:21046143..21046167 (25 bp)
ATGGCTTTTCGGACGGGCTACAGGA
LOC_Os11g36510
OsAffx.459.1.S1_at--721--8314Chr11:21046158..21046182 (25 bp)
GGCTACAGGAGCATCTTCGACAGTG
LOC_Os11g36510
OsAffx.459.1.S1_at--647--10633Chr11:21046173..21046197 (25 bp)
TTCGACAGTGTTTTCGCGCTAACAT
LOC_Os11g36510
OsAffx.459.1.S1_at--1067--4574Chr11:21046188..21046212 (25 bp)
GCGCTAACATGTTGGCTGCTGTGGA
LOC_Os11g36510
OsAffx.459.1.S1_at--6--1853Chr11:21046217..21046241 (25 bp)
ACGCAATGCGCGTGTCTTTGAACAG
LOC_Os11g36510
OsAffx.459.1.S1_at--35--1532Chr07:25898553..25898577 (25 bp)
AGCATAGAACAGCTTGTGCAAGATA
NONE
Target Sequence 
GATATACTCAGTACGTGCGCTTTCACCAGGAGAGTATGGAGGATGATGCAGGGATGGATTGGAATCAATTTCCTCTTGCC
TACAGAGAACGAACCAGCCCTGGCAGATTGGTGGATGAAGGCGAGGATGGCTTTTCGGACGGGCTACAGGAGCATCTTCG
ACAGTGTTTTCGCGCTAACATGTTGGCTGCTGTGGAAAGAACGCAATGCGCGTGTCTTTGAACAGAAATTTCGAAGCATA
GAACAGCTTGTGCAAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis