Browse Element(s) Details


OsAffx.24071.1.S1_at

Description tigr:9630.m00173
TID=OsAffx.24071.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0265011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02600Os.39168.1.S1_at11/112+950728..954690serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os02g02610OsAffx.29313.1.S1_at1/112+956628..960792transposon protein, putative, Mutator sub-class
LOC_Os02g02620Os.51842.1.S1_at11/112+961519..965543sialyltransferase, putative, expressed
LOC_Os02g02630OsAffx.24069.1.S1_at11/112+965931..966388hypothetical protein
LOC_Os02g02640OsAffx.24070.1.S1_at10/112+967172..974497NBS-LRR disease resistance protein, putative
LOC_Os02g02650OsAffx.24071.1.S1_at11/112+975623..976077hypothetical protein
LOC_Os02g02660OsAffx.459.1.S1_at9/112+978126..987135retrotransposon protein, putative, unclassified
LOC_Os02g02660Os.23222.1.S1_at1/112+978126..987135retrotransposon protein, putative, unclassified
LOC_Os02g02670OsAffx.24072.1.S1_at11/112+988442..995506NB-ARC domain containing protein
LOC_Os02g02680NANA2+999809..1005369Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24071.1.S1_at--576--3771Chr02:976023..976047 (25 bp)
CTCTGCTGCATGATCAGCCTGCTGT
LOC_Os02g02650
OsAffx.24071.1.S1_at--740--6431Chr02:975969..976036 (25 bp)
GATCAGCCTGCTGTCAGATGCTACA
LOC_Os02g02650
OsAffx.24071.1.S1_at--852--1291Chr02:975954..975978 (25 bp)
AGATGCTACAGGGAGCTCTACCCAG
LOC_Os02g02650
OsAffx.24071.1.S1_at--27--8091Chr02:975943..975967 (25 bp)
GGAGCTCTACCCAGAGTGCAGGAAG
LOC_Os02g02650
OsAffx.24071.1.S1_at--854--1111Chr02:975929..975953 (25 bp)
AGTGCAGGAAGAACCTACCTCGGTT
LOC_Os02g02650
OsAffx.24071.1.S1_at--643--7891Chr02:975908..975932 (25 bp)
GGTTCATCTGCGTGCATGGATGACT
LOC_Os02g02650
OsAffx.24071.1.S1_at--541--7331Chr02:975897..975921 (25 bp)
GTGCATGGATGACTGCAGCCCCAAC
LOC_Os02g02650
OsAffx.24071.1.S1_at--687--2751Chr02:975872..975896 (25 bp)
AAGAACAAGGTTGTCGCCTGCGACT
LOC_Os02g02650
OsAffx.24071.1.S1_at--351--1731Chr02:975842..975866 (25 bp)
ACCTTTTGCCAGCTCGCAATCTGCG
LOC_Os02g02650
OsAffx.24071.1.S1_at--1015--3391Chr02:975833..975857 (25 bp)
CAGCTCGCAATCTGCGGCACGGCGT
LOC_Os02g02650
OsAffx.24071.1.S1_at--84--3551Chr02:975654..975678 (25 bp)
CATCGTGTGTAGATGGTTGCACCAA
LOC_Os02g02650
Target Sequence 
CTCTGCTGCATGATCAGCCTGCTGTCAGATGCTACAGGGAGCTCTACCCAGAGTGCAGGAAGAACCTACCTCGGTTCATC
TGCGTGCATGGATGACTGCAGCCCCAACAAGAACAAGGTTGTCGCCTGCGACTGCGCCACCTTTTGCCAGCTCGCAATCT
GCGGCACGGCGTCGAACGGGGCAGCTGATGTTGCATCGTGTGTAGATGGTTGCACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis