Browse Element(s) Details


Os.39168.1.S1_at

Description gb:AK111716.1
DB_XREF= gi:37988379
TID=Os.39168.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.39168 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023022O07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022O07, full insert sequence.
FL= gb:AK111716.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0260011/11serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02550Os.2370.2.S1_at10/112+924473..926622peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g02560Os.2370.1.S1_at11/112+926031..929928UTP-glucose-1-phosphate uridylyltransferase, putative, expressed
LOC_Os02g02570Os.51729.1.S1_at11/112+930260..934270autophagy protein Apg5 family, putative, expressed
LOC_Os02g02580Os.52758.1.S1_at11/112+934591..937786expressed protein
LOC_Os02g02590Os.52649.1.A1_at11/112+938375..941300pentatricopeptide, putative, expressed
LOC_Os02g02600Os.39168.1.S1_at11/112+950728..954690serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os02g02610OsAffx.29313.1.S1_at1/112+956628..960792transposon protein, putative, Mutator sub-class
LOC_Os02g02620Os.51842.1.S1_at11/112+961519..965543sialyltransferase, putative, expressed
LOC_Os02g02630OsAffx.24069.1.S1_at11/112+965931..966388hypothetical protein
LOC_Os02g02640OsAffx.24070.1.S1_at10/112+967172..974497NBS-LRR disease resistance protein, putative
LOC_Os02g02650OsAffx.24071.1.S1_at11/112+975623..976077hypothetical protein
LOC_Os02g02660OsAffx.459.1.S1_at9/112+978126..987135retrotransposon protein, putative, unclassified
LOC_Os02g02660Os.23222.1.S1_at1/112+978126..987135retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39168.1.S1_at--988--6291Chr02:954093..954117 (25 bp)
GATGATGTCCGGTCAGCGAGCACTA
LOC_Os02g02600
Os.39168.1.S1_at--10--9771Chr02:954132..954156 (25 bp)
TAATGGGCAGCTCAGCCTTGTGGAC
LOC_Os02g02600
Os.39168.1.S1_at--1027--1671Chr02:954145..954169 (25 bp)
AGCCTTGTGGACTGGGCGAAGCCCT
LOC_Os02g02600
Os.39168.1.S1_at--361--5411Chr02:954162..954186 (25 bp)
GAAGCCCTACTTGGCGGACCGGAGA
LOC_Os02g02600
Os.39168.1.S1_at--954--6851Chr02:954213..954237 (25 bp)
GTTTGAGGGCCAGTATAACTCCAAA
LOC_Os02g02600
Os.39168.1.S1_at--390--2411Chr02:954235..954259 (25 bp)
AAACAAGCTGTTCAGGCGGCGCAGT
LOC_Os02g02600
Os.39168.1.S1_at--508--3491Chr02:954247..954271 (25 bp)
CAGGCGGCGCAGTTGACGTTAAATT
LOC_Os02g02600
Os.39168.1.S1_at--318--9831Chr02:954266..954290 (25 bp)
TAAATTGCCTGGCAGGTGAGCCCAG
LOC_Os02g02600
Os.39168.1.S1_at--1028--3471Chr02:954288..954312 (25 bp)
CAGGAGCAGGCCCTCAATGAAGGAA
LOC_Os02g02600
Os.39168.1.S1_at--656--7891Chr02:954376..954400 (25 bp)
GGTTCATCAAGGGACCATAGCCATG
LOC_Os02g02600
Os.39168.1.S1_at--437--4551Chr02:954596..954620 (25 bp)
GCCCTTGTTGCCCAATCATGATGAG
LOC_Os02g02600
Target Sequence 
GATGATGTCCGGTCAGCGAGCACTAGACCCCAACCGTCCTAATGGGCAGCTCAGCCTTGTGGACTGGGCGAAGCCCTACT
TGGCGGACCGGAGAAAGCTTGCCCGCCTCATGGACCCCCGGTTTGAGGGCCAGTATAACTCCAAACAAGCTGTTCAGGCG
GCGCAGTTGACGTTAAATTGCCTGGCAGGTGAGCCCAGGAGCAGGCCCTCAATGAAGGAAGTTCTTGAGACACTCGAAAG
GATCGAATCAATGAAGAGCCGAGCAAGGGATGCAAGAGGAAGCGGTTCATCAAGGGACCATAGCCATGGTNGCACCACAG
NGCACCAACGGTNATNGCCGCGCCCTGATGGTNGCCGTGGATCAAGGACCAATGGTCACGCCNCGAAGGCACGGTGATAA
ACAGCATTGGAGCTGANNACATTNTTCCTGTAAATGGCCTAAATTTTGTNTGATGTTCAGTTGNANATGGTGATGTTTAT
TTGTTGCTATATCATGAAAGAAGGCCCTTGTTGCCCAATCATGATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis