Browse Element(s) Details


Os.2370.1.S1_at

Description gb:AF249880.1
DB_XREF= gi:7417425
GEN=UDPGase
TID=Os.2370.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2370 (NCBI UniGene Cluster)
DEF=Oryza sativa subsp. indica UDP-glucose pyrophosphorylase (UDPGase) mRNA, complete cds.
PROD=UDP-glucose pyrophosphorylase
FL= gb:AF249880.1 gb:AK071248.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0256011/11UTP-glucose-1-phosphate uridylyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02530Os.28063.1.S1_at11/112+906668..911506signal peptide peptidase family protein, expressed
LOC_Os02g02530Os.7138.1.A1_x_at2/112+906668..911506signal peptide peptidase family protein, expressed
LOC_Os02g02540Os.21831.1.S1_at11/112+918797..923968Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os02g02550Os.2370.2.S1_at10/112+924473..926622peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g02560Os.2370.1.S1_at11/112+926031..929928UTP-glucose-1-phosphate uridylyltransferase, putative, expressed
LOC_Os02g02570Os.51729.1.S1_at11/112+930260..934270autophagy protein Apg5 family, putative, expressed
LOC_Os02g02580Os.52758.1.S1_at11/112+934591..937786expressed protein
LOC_Os02g02590Os.52649.1.A1_at11/112+938375..941300pentatricopeptide, putative, expressed
LOC_Os02g02600Os.39168.1.S1_at11/112+950728..954690serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005985biological_processsucrose metabolism
GO:0008152biological_processmetabolism
GO:0016036biological_processcellular response to phosphate starvation
GO:0003983molecular_functionUTP:glucose-1-phosphate uridylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2370.1.S1_at--245--3451Chr02:927206..927230 (25 bp)
CAGTCTGATCTATATACCTTGGTTG
LOC_Os02g02560
Os.2370.1.S1_at--802--8831Chr02:927183..927207 (25 bp)
TGATGGCTTTGTTACACGCAACCCG
LOC_Os02g02560
Os.2370.1.S1_at--924--2351Chr02:927150..927174 (25 bp)
AAACCCATCGAATCCCTCAATTGAA
LOC_Os02g02560
Os.2370.1.S1_at--632--8771Chr02:927002..927026 (25 bp)
TGTTTCCTTGGTCGCTTCAAGTCAA
LOC_Os02g02560
Os.2370.1.S1_at--696--6851Chr02:926933..926957 (25 bp)
GTTTGGTTTGGCTCTAGCATCACAT
LOC_Os02g02560
Os.2370.1.S1_at--362--1651Chr02:926667..926691 (25 bp)
AGCCCAACCTGGTGTCAAACTGGAA
LOC_Os02g02560
Os.2370.1.S1_at--462--5511Chr02:926342..926643 (25 bp)
GAACAAGGATATCAATGGCCCCGAG
LOC_Os02g02560
Os.2370.1.S1_at--865--8451Chr02:926327..926351 (25 bp)
TGGCCCCGAGGACCTTTGAGCGAAA
LOC_Os02g02560
Os.2370.1.S1_at--936--6011Chr02:926284..926308 (25 bp)
GAGAGATCATATCACCATTCCATAT
LOC_Os02g02560
Os.2370.1.S1_at--465--9591Chr02:926153..926177 (25 bp)
TCTTGTTCTATTTTCTCCTTGTGAG
LOC_Os02g02560
Os.2370.1.S1_at--686--8211Chr02:926126..926150 (25 bp)
GGCAAACAAGTCATGTCCCGGCAAA
LOC_Os02g02560
Target Sequence 
CAGTCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGCAACCCGGCCAGAACAAACCCATCGAATCCCTCAATTGA
ACTGGGTCCAGAGTTCAAGAAGGTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTGACACCT
TGAAGGTTTCCGGTGATGTTTGGTTTGGCTCTAGCATCACATTGAAGGGCAAGGTGACCATCACAGCCCAACCTGGTGTC
AAACTGGAAATCCCAGATGGAGCAGTGATCGAGAACAAGGATATCAATGGCCCCGAGGACCTTTGAGCGAAAGGATGCAG
AGTTCACAAAGAGAGATCATATCACCATTCCATATAATCAATCAAGCTCCACGACATTGTGGAGAATATTTTTGATCCAA
TATTGCTTCGGCATAAGGAATAACAAAATTAGTACATGTCTTTTACCTACTTGACTTTGCTTCTTGTTCTATTTTCTCCT
TGTGAGTGGGCAAACAAGTCATGTCCCGGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis