Browse Element(s) Details


Os.51729.1.S1_at

Description gb:AK063557.1
DB_XREF= gi:32973575
TID=Os.51729.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51729 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-E11, full insert sequence.
FL= gb:AK063557.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0257011/11autophagy protein Apg5 family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02530Os.28063.1.S1_at11/112+906668..911506signal peptide peptidase family protein, expressed
LOC_Os02g02530Os.7138.1.A1_x_at2/112+906668..911506signal peptide peptidase family protein, expressed
LOC_Os02g02540Os.21831.1.S1_at11/112+918797..923968Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os02g02550Os.2370.2.S1_at10/112+924473..926622peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g02560Os.2370.1.S1_at11/112+926031..929928UTP-glucose-1-phosphate uridylyltransferase, putative, expressed
LOC_Os02g02570Os.51729.1.S1_at11/112+930260..934270autophagy protein Apg5 family, putative, expressed
LOC_Os02g02580Os.52758.1.S1_at11/112+934591..937786expressed protein
LOC_Os02g02590Os.52649.1.A1_at11/112+938375..941300pentatricopeptide, putative, expressed
LOC_Os02g02600Os.39168.1.S1_at11/112+950728..954690serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os02g02610OsAffx.29313.1.S1_at1/112+956628..960792transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006914biological_processautophagy
GO:0010149biological_processsenescence (sensu Magnoliophyta)
GO:0042594biological_processresponse to starvation
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51729.1.S1_at--1098--10011Chr02:930803..930827 (25 bp)
TAGAAGCTACATCACCCTGGAACAT
LOC_Os02g02570
Os.51729.1.S1_at--540--2391Chr02:930771..930795 (25 bp)
AAACTTTGCTACCTGAGTTCTTCAG
LOC_Os02g02570
Os.51729.1.S1_at--31--5311Chr02:930743..930767 (25 bp)
GAAGGCATCACGTATACCCGACGAT
LOC_Os02g02570
Os.51729.1.S1_at--983--1251Chr02:930695..930719 (25 bp)
AGATTCAGCCCCTAATGATGATTCT
LOC_Os02g02570
Os.51729.1.S1_at--618--8871Chr02:930680..930704 (25 bp)
TGATGATTCTGATGTCACCCCAAGA
LOC_Os02g02570
Os.51729.1.S1_at--372--4011Chr02:930627..930651 (25 bp)
CGTCGAGCCCGCAAGAGGCGAATGT
LOC_Os02g02570
Os.51729.1.S1_at--1134--5651Chr02:930550..930574 (25 bp)
GACATGGACATACCTTTCCTTTGGG
LOC_Os02g02570
Os.51729.1.S1_at--211--10671Chr02:930525..930549 (25 bp)
TTGCCAACAACCTGAAGAACCCTGA
LOC_Os02g02570
Os.51729.1.S1_at--588--1371Chr02:930510..930534 (25 bp)
AGAACCCTGAATGTTACCTCCATAT
LOC_Os02g02570
Os.51729.1.S1_at--437--2451Chr02:930399..930423 (25 bp)
AAAATCTGGTCTTGGTTCTCATCTT
LOC_Os02g02570
Os.51729.1.S1_at--1010--7891Chr02:930386..930410 (25 bp)
GGTTCTCATCTTGGATGACTCCTAG
LOC_Os02g02570
Target Sequence 
TAGAAGCTACATCACCCTGGAACATGCGTTGAAAACTTTGCTACCTGAGTTCTTCAGCTNGAAGGCATCACGTATACCCG
ACGATTCCGAAANTGCTCCTCAGGCACCAGATTCAGCCCCTAATGATGATTCTGATGTCACCCCAAGAAGTTGTGAGAAG
TTAGAGTCGTNTGCTTCGTCGAGCCCGCAAGAGGCGAATGTGGCCAACAAGGGTAAAATAGTGAAGCTAGTAAGGGTGCA
AGGCATTGAGGTCGACATGGACATACCTTTCCTTTGGGTTGCCAACAACCTGAAGAACCCTGAATGTTACCTCCATATTT
GTGTGTATGTCGGTACAAGAAAACGAGAGCCTAAGGATGGTAGATGAAATGTTAGAAACACAATAGGGAGAGCGCATTCC
AGGAAAAATCTGGTCTTGGTTCTCATCTTGGATGACTCCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis