Browse Element(s) Details


Os.2370.2.S1_at

Description gb:AK112015.1
DB_XREF= gi:37988678
TID=Os.2370.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2370 (NCBI UniGene Cluster)
UG_TITLE=Subsp. indica UDP-glucose pyrophosphorylase (UDPGase) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-303-D03, full insert sequence.
FL= gb:AK111582.1 gb:AK112015.1 gb:AK104162.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0255010/11peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02520Os.19594.1.A1_at11/112+896074..900372expressed protein
LOC_Os02g02530Os.28063.1.S1_at11/112+906668..911506signal peptide peptidase family protein, expressed
LOC_Os02g02530Os.7138.1.A1_x_at2/112+906668..911506signal peptide peptidase family protein, expressed
LOC_Os02g02540Os.21831.1.S1_at11/112+918797..923968Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os02g02550Os.2370.2.S1_at10/112+924473..926622peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g02560Os.2370.1.S1_at11/112+926031..929928UTP-glucose-1-phosphate uridylyltransferase, putative, expressed
LOC_Os02g02570Os.51729.1.S1_at11/112+930260..934270autophagy protein Apg5 family, putative, expressed
LOC_Os02g02580Os.52758.1.S1_at11/112+934591..937786expressed protein
LOC_Os02g02590Os.52649.1.A1_at11/112+938375..941300pentatricopeptide, putative, expressed
LOC_Os02g02600Os.39168.1.S1_at11/112+950728..954690serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2370.2.S1_at--1010--6731Chr02:926113..926137 (25 bp)
GTTCATATGATATTTTGCCGGGACA
LOC_Os02g02550
Os.2370.2.S1_at--491--7631Chr02:926132..926156 (25 bp)
GGGACATGACTTGTTTGCCCACTCA
LOC_Os02g02550
Os.2370.2.S1_at--272--171Chr02:926210..926234 (25 bp)
ATTTTGTTATTCCTTATGCCGAAGC
LOC_Os02g02550
Os.2370.2.S1_at--1127--3271Chr02:926245..926269 (25 bp)
CAAAAATATTCTCCACAATGTCGTG
LOC_Os02g02550
Os.2370.2.S1_at--1021--8711Chr02:926263..926287 (25 bp)
TGTCGTGGAGCTTGATTGATTATAT
LOC_Os02g02550
Os.2370.2.S1_at--895--711Chr02:926299..926323 (25 bp)
ATGATCTCTCTTTGTGAACTCTGCA
LOC_Os02g02550
Os.2370.2.S1_at--505--5471Chr02:926314..926338 (25 bp)
GAACTCTGCATCCTTTCGCTCAAAG
LOC_Os02g02550
Os.2370.2.S1_at--86--191Chr02:926445..926469 (25 bp)
ATTTAGCTCCTCATGTAAGATTGTA
LOC_Os02g02550
Os.2370.2.S1_at--1145--731Chr02:926515..926539 (25 bp)
ATGTTTTTCTATGGCCATCCCAGAT
LOC_Os02g02550
Os.2370.2.S1_at--614--7271Chr02:926552..926576 (25 bp)
GTGCCAAAGTTAGATCATACGATAT
LOC_Os02g02550
Os.2370.2.S1_at--628--2991NONE
AATGATATTGTGCTTCTTCGAAAAA
NONE
Target Sequence 
GTTCATATGATATTTTGCCGGGACATGACTTGTTTGCCCACTCACAAGGNAGAAAATAGAACAAGAAGCAAAGTCAAGTA
GGTAAAAGACATGTACTAATTTTGTTATTCCTTATGCCGAAGCAATATTGGATCAAAAATATTCTCCACAATGTCGTGGA
GCTTGATTGATTATATGGAATGGTGATATGATCTCTCTTTGTGAACTCTGCATCCTTTCGCTCAAAGGTCCTCGGGGCCA
TTGATATCCTGAAATGAGAGAATACATTTTGTTTGAGATATATGTTTATATTTCAAATAAAATAGTGTTTCAGTGGATGA
ATAGAATGCTAAAATTTAGCTCCTCATGTAAGATTGTATTGCTGTGAATTATCTACAAATTATCCTGACTGATAAATAGT
TATATGTTTTTCTATGGCCATCCCAGATAAACAGTTATATGTGCCAAAGTTAGATCATACGATATTTGTTTTTAAACTGC
AAATTTCTACATCAATGATATTGTGCTTCTTCGAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2370.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis