Browse Element(s) Details


Os.52649.1.A1_at

Description gb:AK068524.1
DB_XREF= gi:32978542
TID=Os.52649.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52649 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155O22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155O22, full insert sequence.
FL= gb:AK068524.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0259011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02540Os.21831.1.S1_at11/112+918797..923968Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os02g02550Os.2370.2.S1_at10/112+924473..926622peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g02560Os.2370.1.S1_at11/112+926031..929928UTP-glucose-1-phosphate uridylyltransferase, putative, expressed
LOC_Os02g02570Os.51729.1.S1_at11/112+930260..934270autophagy protein Apg5 family, putative, expressed
LOC_Os02g02580Os.52758.1.S1_at11/112+934591..937786expressed protein
LOC_Os02g02590Os.52649.1.A1_at11/112+938375..941300pentatricopeptide, putative, expressed
LOC_Os02g02600Os.39168.1.S1_at11/112+950728..954690serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os02g02610OsAffx.29313.1.S1_at1/112+956628..960792transposon protein, putative, Mutator sub-class
LOC_Os02g02620Os.51842.1.S1_at11/112+961519..965543sialyltransferase, putative, expressed
LOC_Os02g02630OsAffx.24069.1.S1_at11/112+965931..966388hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52649.1.A1_at--269--1671Chr02:938919..938943 (25 bp)
AGCCTGTTCGGCTGGTTCAGGGACA
LOC_Os02g02590
Os.52649.1.A1_at--863--751Chr02:938871..938895 (25 bp)
ATGTACACGGCGGTGATCCACAGCC
LOC_Os02g02590
Os.52649.1.A1_at--582--991Chr02:938559..938583 (25 bp)
AGGAGGCTGCTTTCGCGCTTGTCTG
LOC_Os02g02590
Os.52649.1.A1_at--1161--9071Chr02:938552..938576 (25 bp)
TGCTTTCGCGCTTGTCTGAGATGGG
LOC_Os02g02590
Os.52649.1.A1_at--596--7671Chr02:938528..938552 (25 bp)
GGGTTGAGCATTCTCAGCTCTGAAA
LOC_Os02g02590
Os.52649.1.A1_at--306--5551Chr02:938499..938523 (25 bp)
GAAACTGATCTTGCTGTTGGCATCT
LOC_Os02g02590
Os.52649.1.A1_at--601--3631Chr02:938490..938514 (25 bp)
CTTGCTGTTGGCATCTGACTAGCAT
LOC_Os02g02590
Os.52649.1.A1_at--1077--8512Chr04:24713859..24713997 (25 bp)
TGGACATTGCACAGAAATTGAACTG
NONE
Os.52649.1.A1_at--320--2251Chr02:938439..938463 (25 bp)
AAATTAGGCTCTGCGTAATTGCCTT
LOC_Os02g02590
Os.52649.1.A1_at--700--3751Chr02:938431..938455 (25 bp)
CTCTGCGTAATTGCCTTTAACCTGT
LOC_Os02g02590
Os.52649.1.A1_at--643--3131Chr02:938423..938447 (25 bp)
AATTGCCTTTAACCTGTAGTAACAG
LOC_Os02g02590
Target Sequence 
AGCCTGTTCGGCTGGTTCAGGGACACCGGCGGGAGGCCCACGGTGGTGATGTACACGGCGGTGATCCACAGCCGGTGCCG
CGACGGGCGGCACCGGGAGGCGCTGTCCCTGGCGTGGGAGATGGAGCGGCACGCCGGCGGCCTCCTCGACCTGCCGGCGT
ACCGGGTGCTGGTGAAGCTGTGCGTGGCGTTGCGCGACCACGAGAGGGGCGTCCGGTACTTGGCGAGGATGAAGGACGCC
GGGTTCGTCCCGACCGGCGACATGTACGGCGGCCTGATCGGAGGCTACGCGGCGGAGGGGAGGATGGGCAGGTGCCGGAG
GCTGATCAGGGAGGCGGAGTTGGCCGGCGTGAAGCTGGAGAGGAGGCTGCTTTCGCGCTTGTCTGAGATGGGGGTTGAGC
ATTCTCAGCTCTGAAAGAAAGAAACTGATCTTGCTGTTGGCATCTGACTAGCATGGACATTGCACAGAAATTGAACTGTA
AAATTAGGCTCTGCGTAATTGCCTTTAACCTGTAGTAACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52649.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis